| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2500 |
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| Symbol | |
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| ID | 3968782 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3162714 |
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| End bp | 3165635 |
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| Gene Length | 2922 bp |
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| Protein Length | 973 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637921591 |
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| Product | Holliday junction DNA helicase RuvB |
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| Protein accession | YP_527972 |
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| Protein GI | 90022145 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1501] Alpha-glucosidases, family 31 of glycosyl hydrolases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.297419 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATTATT ATTTAAACAA AAAGCGACTG GGGCAATTGC TCACCGGCGC GGCCATTATT
CCCGTGCTAT ATGCATGTGG CTCACAGGAA AAAAACGTAG AGCCTGCAAC GGTTAATTGG
CATAAAACAA GCGACGGCGT CGTTGTAAGC TTGCAAGATA GCGAAGCAAA AAAAGTGCGC
TTGCAAGTCA TTAACGATCG GATAGTACGT GTTACCGCTA CGCCACAGCA GGATTTCAAC
AACCTGCCAA ATACGCTTAT GGTGGTGGCC AAGCCCGAGC AAACGGCGTT TGAAGTTAAA
CAAAACGATG CATCTGTTGT GTTATCAACG GCAGATCTAT CTGCCGAAGT GTCATTAGTA
ACTGGTGTTG TAAGTTTTAA AGATGAGCAC GGCAAGGTGC TTACAACAGA AGTTGATCGC
GGCAATTTTG GGGCGGTAAC CCGCGACCCA GGTGTGGTGG ACGCCGATTC ATTTGCTATT
CGCCAACAGT TTACAAGCGA CGAAAATGAA GGCTACTACG GTTTAGGTCA GCAGCAGGAT
GGCGAAGTAA ACTACGCTGG CGATAACGTA GAGTTAACAA CTTACAACTT AGAAATTTCT
ATACCTTATG TTGTATCAAG CAAAGATTAC GCGCTGCTAT GGAACAATAC CTCAATTTCT
CGTTTGGGCG ACCCCAATCC ACCCGAGCCA CTAAAAGAGG GCTTTAAACT CTTTGACGCT
AATGGTAACC CCGGCGGGCT AACCGCACGT TATTTTGATG GCGATAAATT ACTGCTCGAG
CGTGTAGAGG CCGATTTAGA TTATCAATTT TTAGCGCAAG GTAGTAATCG CACTACGCCC
ATGCCTGATG AAACCGCTGA TGCAAAAAAT CTGCGTATTG AATGGGAAGG TAGTATCGAA
TCCGATACCA ACGGTGTGCA CGAGTTAAAA ATGTATTCCA GTGGCTACGC TAAATTGTAT
TTGAATGGCG AGTTAGTGTT AGATCGCTGG CGTATGAACT GGAACCCTTG GTATCACAAC
ACCAAGTTAG AAATGCAGGC CGGTAAAAAA GTTGCATTAA AGTTAGATTG GCAAGTAGAT
GGTGGTTATA TGCGCATAAA ACAGCATAAA CCACTGCCGG TAGCAGAGCA GGGACGTTTG
TCTATTGCTT CCGATACCGC GAAAGCCATT GATTACTACT TTGTAGTTGG CGATAACAAG
GATGAGTTGG TGTCTGGCTA CCGTACGCTC ACAGGTAAAG CAGTGATGCT ACCTAAGTGG
GTGTTTGGTT TTTGGCAAAG CCGCGAGCGC TATAAAACAC AAGATGAAAT TATCGACGCC
TTGCAAGAAT ACCGCGATCG TAAAATTCCT ATCGATAACA TTGTATTAGA TTGGAGTTAT
TGGCCTCAGG ATGCATGGGG TAGTCATGAT TTCGACGAGC AATTTTTCCC CGACCCATCT
GCACTAGTAG ATAAAGTACA CGAGCTAAAC GGCAATATTA TGATTTCCGT ATGGCCTAAG
TTTTACCCTA CAACCGACAA CTACAAAGCG CTAAACGCTA AAGGTTGTAT GTTTAATAAA
AACATCGAGC AGAAAAACCT CGATTGGATT GGCGAGGGTT ACCTAAATGG CTTTTACGAT
GCCTATAACC CAGAGTGCCG TGAAATGTTT TGGGCGCAAA TTCGCGATAA GATCAATGTG
CACGGTTTCG ATGCTTGGTG GTTAGATGCG GTAGAGCCAG ATATCCATTC CAACCTTTCT
TTTGAGCACC GCAAAGATTT AATGACACCC AATGCACTCG GCACCGGTGC CGAAGTGTTT
AACGCTTACG CTTTGCCGCA CGCAGAAACT GTTTACCAAG GCGAGCGTAG AGATGACGGT
GACAAGCGCG CATTTATTCT AACGCGTTCT GGGTTTGCCG GTATTCAGCG CACCGGTTCG
GCTATTTGGA GTGGCGATGT GGTATCGCGC TGGTCCGACT TAAAAGAACA AATTGCAGCA
GGTGTGGGCG TGGGCATTTC TGGTATGCCG TATTGGACGT TCGATATCGG TGGCTTTACT
CCAGAAGATC GCTACCGTTA TAGCGCCAAA GGTTCTGTTG GTCATTTCTC TATGATGAAC
GAATCGGAAG TGCCTGAATG GCAAGAAATC AATCTGCGTT GGTTCCAATT TGGTACCTTT
GTGCCGCTGT TTAGGTCCCA CGGCCAAAAC CCATATCGCG AAATATATAA CATCGCCGAT
AAAGGCACCG AGGTATACGA CAGCATGGTG TGGTACACCA AAACTCGCTA TCGCTTAATG
CCTTATATTT ATTCGTTAGT TGGCGATGCT CACCACAAAG ACGGCACCTT TATGCGCGCT
CTGGTGATGG ATTTCCCTAG CGACCTTAAT GTGCGCGATA TTAACGACCA GTATATGTTT
GGCCCCGCGC TACTCGTAAA CCCTGTGTCG GAATTTAAAG CGCGTTCACG GGATGTGTAT
CTACCTGCGG GCGCAGATTG GTACGATTTC TATACAGGTG TGAAGCACAC AGGTGGTAAA
ACCATTAAGG CCGATGCACC GCTTGCCAAA ATGCCTATTT TTGTTAAGGC CGGCTCTATT
ATTCCAACAG GTGTAGAAAT CCAGCATGTG TACGATAAGC CCGATGCTCC TTACACCCTT
AACGTGTATA CCGGTGCGAA TGGCAGCTTC GAAATTTATG AAGATGACGG CAAAACCTAC
GCTTACGAGC AAGGGGCTTG GGCGCGCATT CCCGTTTCGT ACAACGATAA AACCGGTGAG
CTAACCATTG GCGATCGCGT AGGTAGCTTT GAGGGAATGA CCAAAGAGCG CGAATTCCGC
GTGCGCTGGA TATCTGCCAA GCGAGACGAT GCCGCCAATT TCGATACAGG TGTGGCCAAA
GCCGTTACCT ATACGGGTAA GGCAATAACC ATTAAGCGCT AA
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| Protein sequence | MNYYLNKKRL GQLLTGAAII PVLYACGSQE KNVEPATVNW HKTSDGVVVS LQDSEAKKVR
LQVINDRIVR VTATPQQDFN NLPNTLMVVA KPEQTAFEVK QNDASVVLST ADLSAEVSLV
TGVVSFKDEH GKVLTTEVDR GNFGAVTRDP GVVDADSFAI RQQFTSDENE GYYGLGQQQD
GEVNYAGDNV ELTTYNLEIS IPYVVSSKDY ALLWNNTSIS RLGDPNPPEP LKEGFKLFDA
NGNPGGLTAR YFDGDKLLLE RVEADLDYQF LAQGSNRTTP MPDETADAKN LRIEWEGSIE
SDTNGVHELK MYSSGYAKLY LNGELVLDRW RMNWNPWYHN TKLEMQAGKK VALKLDWQVD
GGYMRIKQHK PLPVAEQGRL SIASDTAKAI DYYFVVGDNK DELVSGYRTL TGKAVMLPKW
VFGFWQSRER YKTQDEIIDA LQEYRDRKIP IDNIVLDWSY WPQDAWGSHD FDEQFFPDPS
ALVDKVHELN GNIMISVWPK FYPTTDNYKA LNAKGCMFNK NIEQKNLDWI GEGYLNGFYD
AYNPECREMF WAQIRDKINV HGFDAWWLDA VEPDIHSNLS FEHRKDLMTP NALGTGAEVF
NAYALPHAET VYQGERRDDG DKRAFILTRS GFAGIQRTGS AIWSGDVVSR WSDLKEQIAA
GVGVGISGMP YWTFDIGGFT PEDRYRYSAK GSVGHFSMMN ESEVPEWQEI NLRWFQFGTF
VPLFRSHGQN PYREIYNIAD KGTEVYDSMV WYTKTRYRLM PYIYSLVGDA HHKDGTFMRA
LVMDFPSDLN VRDINDQYMF GPALLVNPVS EFKARSRDVY LPAGADWYDF YTGVKHTGGK
TIKADAPLAK MPIFVKAGSI IPTGVEIQHV YDKPDAPYTL NVYTGANGSF EIYEDDGKTY
AYEQGAWARI PVSYNDKTGE LTIGDRVGSF EGMTKEREFR VRWISAKRDD AANFDTGVAK
AVTYTGKAIT IKR
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