| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2476 |
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| Symbol | |
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| ID | 3964923 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3126768 |
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| End bp | 3129662 |
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| Gene Length | 2895 bp |
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| Protein Length | 964 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637921567 |
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| Product | glycine dehydrogenase |
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| Protein accession | YP_527948 |
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| Protein GI | 90022121 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0403] Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain
[COG1003] Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain |
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| TIGRFAM ID | [TIGR00461] glycine dehydrogenase (decarboxylating) |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACACG GCACTTCTTT AGACGAACTT TTCAACTCAC GCGATTTCAT AGGCCGCCAT
ATTGGCCCCA ATGCAGATCA AACGCGAGCC ATGTTGGATG CCATGGGGCT GGATAGCATA
GACCAGCTTA TAGACCTTAC CGTACCCGCG TCTATTCGCG GTGAAGAAAC CCGCGCCCTA
GCCGCACCGG TAAACGAGCA GCAAGCCTTA GCCGAGCTAA AAAACATTGC AGGCAACAAC
CAACGCTTTA AAAGCTATAT AGGCATGGGC TACCACCCTA CCTATGTACC CCCCGTTATA
TTGCGCAATG TATTAGAGAA TCCAGGCTGG TACACCGCCT ATACGCCCTA CCAGCCAGAA
ATTGCACAGG GGCGATTGGA AGGCTTACTT AACTTCCAAC AAATGATCAT TGAATTAACC
GGCATGGATA TGGCCAACGC CTCTATGCTA GATGAAGCTA CCGCCGCAGC CGAAGCCATG
GCAATGGCCA AACGCGTTGC CCGTAAAAAC AAAAGCAACA CCTTCTTTGC CGATAAACAC
TGCCATCCAC AAACCCTTGC CGTATTGCAA ACCCGTGCCA GTCACTTTGG CTTTGAGCTT
GTTATTGGCG ACATAACCCA AGACCTAAAC AAGCAAGAAG TATTTGGCGC CATCACCCAG
TACCCCGGCA CCTCGGGCGA AGTAAAAGAC CTGCGCCCAA TAGTTAACCA AGCCCACGAG
CAAGATGCGC TATTAATCGT AGCCGCCGAC ATTCTTAGCT TGGTGTTACT CGAATCCCCC
GGTGCGATGG GGGCCGACAT AGTAGTGGGC AGCAACCAAC GCTTTGGTAT TCCTATGGGC
TTTGGTGGCC CACACGCTGC GTTTTTTGGG TTTAGAGAAA AGTACAAACG CGCAACCCCT
GGCCGCATTA TTGGCGTATC GGTAGATACA CGCGGCAAAC GCGCACTGCG TATGGCCATG
CAAACCCGCG AGCAGCACAT ACGCCGCGAA AAAGCCAACT CCAACATTTG TACATCGCAG
GTTTTATTGG CGGTGATGAG CGTGTTTTAC GCCATGTACC ACGGCAGCGC GGGCGTTACC
CGAATAGCGC AACGCGTGCA CACCCTAACC AAGATGCTTG CCCAAGGCTT AACAGCACAG
GGCCACAAGT TGGCGTTTGA TAACTACTTC GACACCTTGT GTGTAATAGT GAACGATCAA
CAACAAGGCC TGTTTGATCG CGCCCAGCAA GCGGGTGTTA ACCTGCGTAA ACTCGATAAA
AACGCGCTAA CTATTAGCTT AAACGAATGC ACAAGCCTAG AAGATATCCA CCAATTGCTG
GATATTTTCT CACTAGGCAA ACACTCGCAA GATGTTAAAA GCTTAGAAAC CAAAGCCCTA
GCCGCAGAAG TGATTCCCGC TAGCTGCCGC CGCGAAGGCC CAGCGCTTAA CCACCCAGTG
TTTGAGCAAT ACCACTCAGA AACCGAAATG CTGCGCTACT TAAAGCGTTT AGAGTCGAAA
GATATTGCCC TAAACCACGC AATGATTCCC CTCGGCTCTT GCACCATGAA GCTAAACGCT
ACAGCCGAAA TGATTCCCGT AACTTGGCCA GAATTTGGTG AGCTACACCC CTTTGCGCCA
ATGGAGCAAG CCGCTGGCTA CAGCACTTTG TTTACGCAAC TGCAAGATAT GCTAAAAGCC
TGTACCGGCT ACGACGCCAT TAGCCTGCAA CCCAATGCTG GCTCGCAAGG CGAATACGCT
GGCCTTGTGG CAATACGTAA ATACTTCGAG CACCTAGGTC AAACCGAGCG CAATATTTGT
TTAATACCCG CCTCGGCCCA CGGCACCAAC CCAGCCTCGG CACAAATGGT AGAAATGAAA
GTGGTAGTCG TTGCCTGCGA TAACCTCGGC AACGTAGACC TGAACGACCT AAAAGCTAAA
GTAGCCCAAT ACGGTGAAAC CATTGCCGCA TTAATGGTTA CCTACCCATC TACCCACGGC
GTGTTTGAAG AAGAAATTAC CGCCATTTGC GACCTCATCC ACTCGGTCGG TGCACAAGTG
TATATAGACG GCGCCAATAT GAACGCCCTT GTGGGCTTGG CGGCACCAGG TAAATTTGGT
GGCGATGTAT CGCACTTAAA CCTGCACAAA ACCTTCTGTA TTCCACACGG CGGCGGCGGC
CCGGGCATGG GCCCTATTGG TGTAAAATCT CATCTTGCGC CCTTCTTGGC CGGCCATCCA
GTACAACCCG TGCCCAACAC ATTGGTAGAA AACGGCACCA TATCTGCTGC GCCGTGGGGC
TCGGCAAGTA TTTTAACCAT TAGCTGGATG TACATTCGCA TGATGGGTGC CGAAGGTATG
AAGCGCGCAA CCGAGTTCGC CATATTAAAC GCCAACTACA TAGCGCACCG CCTGCAAGAC
CACTACCCCA TTTTGTACAA AGGTAAAAAC GGCTACATTG CCCACGAGTG CCTACTAGAC
TTGCGCCCAC TAAAAGAAAG CAGCGGCATA ACCGAAGAAG ACATAGCCAA ACGCTTAATG
GATTTCGGCT TCCACGCACC TACCATGTCG TTCCCCGTGG CTGGCACACT TATGATCGAG
CCAACCGAAT CGGAATCACA AGCAGAGCTA GACCGCTTCT GCGACGCCAT GATTAAAATT
CGTCAAGAAG CCTCTCTAGT AGAAAGCGGC GAACTACCAA GGGATAACAA CCCCCTAGTT
AACGCCCCCC ACACCCTAGA CGACGCCCTA GACGAAACGT GGACACGCCC CTACACCCGC
GACGAAGCCA CCCGCCCACT ACCTTACCTA CACGCACACA AGATTTGGCC TACGGTGAAT
CGTATTGATA ATGTGTATGG GGATAGAAAT TTAATTTGTA GTTGCCCAAG TATTGAGAGT
TATACAGAAG AGTAA
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| Protein sequence | MSHGTSLDEL FNSRDFIGRH IGPNADQTRA MLDAMGLDSI DQLIDLTVPA SIRGEETRAL
AAPVNEQQAL AELKNIAGNN QRFKSYIGMG YHPTYVPPVI LRNVLENPGW YTAYTPYQPE
IAQGRLEGLL NFQQMIIELT GMDMANASML DEATAAAEAM AMAKRVARKN KSNTFFADKH
CHPQTLAVLQ TRASHFGFEL VIGDITQDLN KQEVFGAITQ YPGTSGEVKD LRPIVNQAHE
QDALLIVAAD ILSLVLLESP GAMGADIVVG SNQRFGIPMG FGGPHAAFFG FREKYKRATP
GRIIGVSVDT RGKRALRMAM QTREQHIRRE KANSNICTSQ VLLAVMSVFY AMYHGSAGVT
RIAQRVHTLT KMLAQGLTAQ GHKLAFDNYF DTLCVIVNDQ QQGLFDRAQQ AGVNLRKLDK
NALTISLNEC TSLEDIHQLL DIFSLGKHSQ DVKSLETKAL AAEVIPASCR REGPALNHPV
FEQYHSETEM LRYLKRLESK DIALNHAMIP LGSCTMKLNA TAEMIPVTWP EFGELHPFAP
MEQAAGYSTL FTQLQDMLKA CTGYDAISLQ PNAGSQGEYA GLVAIRKYFE HLGQTERNIC
LIPASAHGTN PASAQMVEMK VVVVACDNLG NVDLNDLKAK VAQYGETIAA LMVTYPSTHG
VFEEEITAIC DLIHSVGAQV YIDGANMNAL VGLAAPGKFG GDVSHLNLHK TFCIPHGGGG
PGMGPIGVKS HLAPFLAGHP VQPVPNTLVE NGTISAAPWG SASILTISWM YIRMMGAEGM
KRATEFAILN ANYIAHRLQD HYPILYKGKN GYIAHECLLD LRPLKESSGI TEEDIAKRLM
DFGFHAPTMS FPVAGTLMIE PTESESQAEL DRFCDAMIKI RQEASLVESG ELPRDNNPLV
NAPHTLDDAL DETWTRPYTR DEATRPLPYL HAHKIWPTVN RIDNVYGDRN LICSCPSIES
YTEE
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