| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2448 |
|---|
| Symbol | |
|---|
| ID | 3965395 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 3095296 |
|---|
| End bp | 3096375 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637921539 |
|---|
| Product | membrane-fusion protein-like |
|---|
| Protein accession | YP_527920 |
|---|
| Protein GI | 90022093 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.674132 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.332439 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGAT TAACAATAAT CTGCTTACTG CTTGCAGTTG GCGTTTTTTC AAAGAGCGCC
ATGGCAGAAT TAGATGTAGT AACCGGTGAG ATCGTCTCGC AGCATCATGA CATAACTATA
AAATCGCAAG GTTTTATTGT GCCGTTTCAA CAAACAACAC TAGCTGCGCA AGTAACGGGT
GATGTCAATC ATATTTCAAA CCACTTTGAG CCAGGCATGA GTGTGGCAAA AGGGGAGATT
CTGTTTTCGA TTGATAATAC CAACTATTTA GCCCAAGTTG CCGAAGCAAA ACAGCGTATG
CTGGAAGCGC GCTTAGCGCT TGAAGACGAA AAAGTACGCG CAGATAGAGC GAAAAAAGAT
TGGCGCATGA CTCAGTCTAC CGAACCCAAT GAATTGGCGG GTAGGGATTT ATATGTTGAT
GCTGCGCAGG CTGCACTCGA GGCAGCCGAA TCCCGTTTAC AGCAGGCAAA GCGAGATTTG
TCGCTAACTG TTGTGCGCGC GCCCTACGAT GGTGTAGTTA AAACCCGAGA AATTAGCTTG
GGAGATTTGC TTATGCCTGG GGCCGTGGCG GGCAGCTTTA TTCAAGCTGA TGTCGCGGCA
TTAGAGTTGC CTATCCGGTT GGAAGAGTTG CCCCTTATTA AGAATATAGA TTTTTTGCGC
GTCGAGCTTA AATCCGTTAA TGGCGGCGAT AGTATCTCGC AAAGCGTAGA TGCGTATCCT
GTGTCATTGT CTGCAGATTT AAACAAGCAG GAGCAACAAG CGCGCTTGCG TGTGAAGGTG
CCTTTAACAA ACTCCGGCGA AAGCAAGTTA TTTGTAAACC AATATGTGGT AGCCAAAATT
AGTATTCCTA GCAGTGAAAA GTTATTTGCT ATACCCGAAG AAGTATTCAC TCAGCGAAAT
TCAATTCTCT CTGTAAAAGG AGGGGTGATT GCCGAGAAAT TTCCTGAGGT GGTTTATCAA
TATAAGGGTA AAAAATATTG CCTGCTCGGC GATATAGATT CCATTGAAGT AATCACCGAA
ACGCCTGACT TGTACTGGGC TGGCGCTGCG GTTAACCCCG TTAATATCTC AATGTTTTAA
|
|---|
| Protein sequence | MNRLTIICLL LAVGVFSKSA MAELDVVTGE IVSQHHDITI KSQGFIVPFQ QTTLAAQVTG
DVNHISNHFE PGMSVAKGEI LFSIDNTNYL AQVAEAKQRM LEARLALEDE KVRADRAKKD
WRMTQSTEPN ELAGRDLYVD AAQAALEAAE SRLQQAKRDL SLTVVRAPYD GVVKTREISL
GDLLMPGAVA GSFIQADVAA LELPIRLEEL PLIKNIDFLR VELKSVNGGD SISQSVDAYP
VSLSADLNKQ EQQARLRVKV PLTNSGESKL FVNQYVVAKI SIPSSEKLFA IPEEVFTQRN
SILSVKGGVI AEKFPEVVYQ YKGKKYCLLG DIDSIEVITE TPDLYWAGAA VNPVNISMF
|
|---|
| |