| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2447 |
|---|
| Symbol | |
|---|
| ID | 3965394 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 3092071 |
|---|
| End bp | 3095232 |
|---|
| Gene Length | 3162 bp |
|---|
| Protein Length | 1053 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637921538 |
|---|
| Product | RND family efflux transporter |
|---|
| Protein accession | YP_527919 |
|---|
| Protein GI | 90022092 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0926263 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.198336 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAACA AACAATATCA ACAGGGTGAT TCTTCTGGCG GTTTGTCCGG CTGGTTTGTA
ATGCATCCAA ATGCGGCAAA AATTTTACTT ATGGTCATTA TGCTGGCCGG ATTTGTGGGC
GTAAACTCTT TGCCGCAAGA AGTGTTTCCG CCATTTGCGC CTAGTCGTGT CGATATTGAT
ATTCCCGTAA GAGGGGGTAC CGCAAGTGAT GTAGAAGAGC TTGTGGTGAA AAAGGTAGAA
GAATCGTTAG AAGGTTTGGC AGGCATTGAG CGCATAGTGG CGAACAGCAC CGATAACGGC
GCGCGTATTT CTGTAGAGCT AGTTAACGGT GCAGACCAGC AAAGCCTGCT TAGTTTAATT
AAATCGCGGG TAGATGGTAT TAGTGGTTTA CCTATTTCTT CCGAGCCACC TGTATTTAGC
TTGCCCGAGC CTGTAGGCCC GGTACAGTTT ATTAATATTA CCGGCGATGT ACCTTTACCT
GCATTGCTAG GGCAGGCGGT AAAATTTAAA AGTGAGCTAT CCCGCCTGGA GGGCATATCG
TACGCGGTAA TTGAAAACGA ACCAGAGCTC CCGTTATATA TAGATATTAA CCCCGATAAA
CTACAGCAAT ATCAATTAAG TTTAACCGAC GTTGCAGATA CCGTTGCGCG CTACTCGGTA
AACGTTGCTG GCGGTACCAT ACAAACGCTC GGCAACCGCT ATCAGTTACG CGCGAATACG
CTGGGTAATA TGGCGAGTGA TTTTATCGAT ATTCCCATTG TATCTGCGGC GAGTGGTGTA
GTTGTAAGAT TAGGGGACAT TGCAGAAATT CAGTTAGCGC CTCACGACGA TTATGTAGCC
GGAAAATTTA ACGGCAAACC CAGCTTAATG CTTTCTGTGT ATCGCGACCC AAAGGTGCCG
TTTAGCACGG CCAGTGAATC GATTAATGCA CTGCTTGACG CCAAGCGCGC TGCCCTTAGC
CCAGCTATTG AATTGATAGC TTGGCAGGAT GAATCGCGAG AGTTTACAAC CCGTATTTCG
TTATTAGTTA AAAACGGCGT GGGCGGCTTT ATTATTATTT GCCTGTTGAT GGGTATTTTT
GTAAACCCTC AAATAGCCAT TTGGACAGCG ATAGGTATTC CCATCTCAAT TCTAGGCGCG
ATGGGGTTGA TGCATTTTGC AGGCTTAGAT TTATCGCTAA ACGCGGTTAC ATTGCTTGGT
TTTATTATTG CGTTGGGCAT GATTGTGGAT GATGCCTTGG TAATTGGGGA GAGCATTCAG
TATGAAACCG CCCAAAATGG GCATTCTATG CACTCGGTGG TGACCGGTGT AAACCGCGTT
GCTATTCCTG CAACGTTTGG TGTGCTTACA ACAATTGCTG CGTTTTTTCC GCTTACTTTA
ACGGAAGGGG ATATGGGCAG CAAATTAGGC GGCGTTGGAA TGGTTGTGAT TTGCTGCTTA
ATTGTTTCGC TGGTGGAGTC TAAGTTTGTA TTGCCCAGCC ACTTGCGCAA ACCTTCAAAA
ATATTGCAAA AACCTGCGTT CAATAAATTG AATGCGCTAT CGACCGGCGC CACTAAAAAA
ATGGATGGGT TTGTTGAGCG TTATTATAAG CCCGCTTTAG ATTGGGTTGT TGTACGCCCT
GTTCGCACCA TTTCTGCTGT AGTCGGGGTG TTGGTTATTT CGCTGGCGAT GATACCTCTC
GGCTTATTAA AAATGGCCAT TATTCCCAAT ATTGCCGATT TCGCATTACA GGCATCTTTT
CAGTTTCATC CTTCTGTTGC GCCGTCTATA CGTGAAACTA TTGGCGATAA AGCAACCGAG
CAGTTACGTG CGGTAAGCGA AGAAGTAAAA CAGAAATATA ATCTTGATTA TCAACCGGTA
AAGCATATTA GCCAGCATTA TAGCGGCAGC GAGCTTGTGG TGGATGTAGA GCTAGAAGAA
GCCTTTAACG CCCCCTACGA TGCTTATGAT ATTCAACAAA TGTGGCGAGA TAGCTTGCCC
TATACGCCGG GTATTTCTTC GTTAAGTATT GATGCAGGGT CTGGCAGTAG TGAAAAAATT
GCTATAGAGC TAAGCGGAGA AAACATTGAA TCGCTAAGAG CGCTATCTAA AGAATTACGT
GAGCATTTAG CCAGCCAAGA TGACGTGGTT GATATTCGCG ATTCTGAACT GGCCAATATG
ATTGAATACA GATTCAAACC TACAGATTTA GCTAAAAGCT TAAATATAAG TGACGCAGAA
ATTATTACGC AGGTTCGTGC CGCTTTCTAT GGGCAAGAGG CTCAGCGTAT TACTGTAGGT
GAGCGCGAAG CAAGAGTTAT GGTGCGCTTA GAAGACGAAT ATCGGCATTC GCTAACTGGC
TTAAATGCCA TGTTGTTACC TATACAGTCA GCAGACGGCA GCAAACAGTA TATTCCTTTG
TCGCAATTGG TTGAAATAGA ACAAAATGTT GTGCCTTCTG AAATACGACG TATTAATAAG
CAGCGCACAA TAACGGTATA TGCCAATACC AAAATGAATA CACGGTCGCC TGAAGATGTA
GCAGAAGAGA TGGGTGAGAG CGTTTTGCCA GAAATGGTTA AAGCCTACCC TGGTGTGGGG
TTTAGCATTG AGGGCGAGGC AAAAGAGGCT AATAAATCTT TATCTAGTAT TTTATCGTCT
GCTGGGTTAG CCGGTTTTAT TTTGTTCGCG CTTATGGCGT TGCCACTCGG GTCATTCCGC
TACCCTGCGT TAATTTTATG TTTAATACCT TTTGGTATGA TCGGCGCAGT GTGGGGGCAT
ATTGCCTATG GCCTAACCTT TAGTTTAATG TCGATTTTTG GTGTGATTGC ATTGGCAGGG
GTATTGATTA ATAACGGGTT ACTCTTGGTG GATCAATATC GAGAAAACAT AAGGCTAGGA
CAAGATATAA CCGAAGCAAT AAAGCAGGCA TGTGTACGCC GATTCCGCCC AATTGTATTA
ACGTCCATTA CCACGCTTGC AGGGCTTATG CCTTTAATGT GGGAAGGCGA CCCAGAAGCC
TTGTGGTTGG TCCCAATAGC CATTTCGTTG GGGGTCGGTT TGCTAGTGGC TACCGCTATA
ACACTAATTA TATTTCCTGC CATGTTGTTG TTGCTTGATC GCAATAAAGT ACATGAGCAG
CAGGAAGAGT TTACGAGTGG TATACAGCCG AAAGAAGTAT AA
|
|---|
| Protein sequence | MENKQYQQGD SSGGLSGWFV MHPNAAKILL MVIMLAGFVG VNSLPQEVFP PFAPSRVDID
IPVRGGTASD VEELVVKKVE ESLEGLAGIE RIVANSTDNG ARISVELVNG ADQQSLLSLI
KSRVDGISGL PISSEPPVFS LPEPVGPVQF INITGDVPLP ALLGQAVKFK SELSRLEGIS
YAVIENEPEL PLYIDINPDK LQQYQLSLTD VADTVARYSV NVAGGTIQTL GNRYQLRANT
LGNMASDFID IPIVSAASGV VVRLGDIAEI QLAPHDDYVA GKFNGKPSLM LSVYRDPKVP
FSTASESINA LLDAKRAALS PAIELIAWQD ESREFTTRIS LLVKNGVGGF IIICLLMGIF
VNPQIAIWTA IGIPISILGA MGLMHFAGLD LSLNAVTLLG FIIALGMIVD DALVIGESIQ
YETAQNGHSM HSVVTGVNRV AIPATFGVLT TIAAFFPLTL TEGDMGSKLG GVGMVVICCL
IVSLVESKFV LPSHLRKPSK ILQKPAFNKL NALSTGATKK MDGFVERYYK PALDWVVVRP
VRTISAVVGV LVISLAMIPL GLLKMAIIPN IADFALQASF QFHPSVAPSI RETIGDKATE
QLRAVSEEVK QKYNLDYQPV KHISQHYSGS ELVVDVELEE AFNAPYDAYD IQQMWRDSLP
YTPGISSLSI DAGSGSSEKI AIELSGENIE SLRALSKELR EHLASQDDVV DIRDSELANM
IEYRFKPTDL AKSLNISDAE IITQVRAAFY GQEAQRITVG EREARVMVRL EDEYRHSLTG
LNAMLLPIQS ADGSKQYIPL SQLVEIEQNV VPSEIRRINK QRTITVYANT KMNTRSPEDV
AEEMGESVLP EMVKAYPGVG FSIEGEAKEA NKSLSSILSS AGLAGFILFA LMALPLGSFR
YPALILCLIP FGMIGAVWGH IAYGLTFSLM SIFGVIALAG VLINNGLLLV DQYRENIRLG
QDITEAIKQA CVRRFRPIVL TSITTLAGLM PLMWEGDPEA LWLVPIAISL GVGLLVATAI
TLIIFPAMLL LLDRNKVHEQ QEEFTSGIQP KEV
|
|---|
| |