Gene Sde_2388 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2388 
Symbol 
ID3967908 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp3027753 
End bp3028310 
Gene Length558 bp 
Protein Length185 aa 
Translation table11 
GC content45% 
IMG OID637921479 
Productsigma-24 (FecI-like) 
Protein accessionYP_527860 
Protein GI90022033 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.0412661 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000504088 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCGATG AATCAAACGT GCAGTCTATC TATTTGTCTA TACAAAAAGC GCTATCACGA 
GCGGTATCCC GCATAGTACC GCCGCACGAC GTGGAAGATA TAGTCCAAGA GACTTATGTA
CGCGTATGTC AAGTTAAGCA ACCGAGCACC ATTACGCACC CGCGCTCTTT TATGCTGAAA
ACCGCGCGCA ACCTCGCGCT AGATTATATA AAGCGGGCAG ACAACAAACT AACAGACAGT
TTAGATGAAG ACACACAAGA TAATTTAGCA AGCTACAAAG ACGACCCATA CCGCCGCGCG
GCAGGCGAGC AAGACTTTGC CCTATTTTGC GAAGCTGTGA GGCAGCTACC GGTGCAATGT
AGAAAGGTAT TTGTACTTAA AAAGGTTTAC GGTTACTCGC AACAAGAAAT AGCCAAAGAA
CTGGGTATTA GCCAAAGCAC CGTAGAAAAA CACATAGCGC AAGGCCTAAA ACGCTGCGCC
AATTTTTTAG ATAACAAACA AGATAAATCG ACAATGCAAG TAGTTAGATC ATCCCATTCC
AAAGGGGCAA GTTTATGA
 
Protein sequence
MTDESNVQSI YLSIQKALSR AVSRIVPPHD VEDIVQETYV RVCQVKQPST ITHPRSFMLK 
TARNLALDYI KRADNKLTDS LDEDTQDNLA SYKDDPYRRA AGEQDFALFC EAVRQLPVQC
RKVFVLKKVY GYSQQEIAKE LGISQSTVEK HIAQGLKRCA NFLDNKQDKS TMQVVRSSHS
KGASL