| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2298 |
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| Symbol | |
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| ID | 3967351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2922812 |
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| End bp | 2924473 |
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| Gene Length | 1662 bp |
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| Protein Length | 553 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637921389 |
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| Product | 2-isopropylmalate synthase |
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| Protein accession | YP_527770 |
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| Protein GI | 90021943 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR00970] 2-isopropylmalate synthase, yeast type |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0003511 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTTGCTC AGCCAGCGCA AAAATACCGT CCATTTAAAG GTGCACAGTT AGCCGATCGT
CAATGGCCAA ACCGCACTAT AGAAAAACCG CCCATTTGGA TGAGCACGGA TTTGCGTGAT
GGTAATCAGG CGCTTATCGA CCCCATGTCG GTGGAAACCA AGCTTACGTT TTTTAAAGAA
ATTGTCGCTA TGAATTTTAA GGAGATCGAA ATTGGGTTTC CTTCTGCATC CGATACCGAT
TTTCAGTTTA CGCGCAGGCT TATTGACGAA GGGCACATTC CTGAAGATGT GACCATAGAG
GTGCTTGTAC AAGCGCGTAA AGAATTAATA GAGCGCACCG TAGAAAGTGT GCGCGGTGCA
AAGCGGGTGA TTATTCATAT GTACAACCCC ACTGCGCCTA GCTTTCGCTC TATTGTGTAT
AAAACCGATA AAGCCGGTGT TAAAAATATT GCGGTGCAAG GCACCAAGTG GGTGATGGAA
GCCACAGCCA AGGCGCCTGA GGTGGAGTGG GTATACCAAT ATTCGCCAGA GGTTTTTTCT
GGCACAGAAA TAGAATTTTC CAAAGAAGTG GTGGATGCTG TAAGTGCAAC ATGGCAACCA
ACGCCAGAAA ATAAAATGAT TATTAATTTA CCCGCAACCG TAGAAATGGG TACGCCCAAT
ACCTACGCGG ATCAAATTGA GTGGATGCAC CGTTATATAG AGCGGCGCGA TTCTATAGTG
TTAAGTGTTC ACCCGCATAA CGATAGGGGT ACAGCCGTTG CGGCTGCCGA ATTAGCGGTA
ATGGCGGGCG CAGATAGGGT AGAGGGGTGT TTGTTTGGTA ATGGCGAGCG CACCGGTAAT
GTGGATTTGG TTACCCTTGC GCTTAACCTT TATACGCAGG GTGTGCACCC AGGGTTAGAT
TTTTCTGATA TAGATAAAGT GCGCAAACTT GTAGAAACCT GTAACCAAAT ACCTGTGCAT
CCGCGCCACC CATACGCCGG TGAACTTGTA TTTACGGCGT TTTCTGGTTC GCATCAAGAT
GCGATTAAGA AAGGGTTTGC GCAACGAAAA GACGGCGAAA TTTGGGAAGT ACCTTACTTG
CCAATAGACC CTAAAGATTT AAATCGCGAT TATGATGCCG TGGTGCGTGT AAACAGCCAG
TCTGGTAAAG GTGGCGTGAG CTTTTTACTT CAACAAAAGG CTGGTTTGGA ATTGCCGCGC
CGCTTACAAA TAGAATTTAG TGGCATAGTG CAAAAAATTA ATGATGAAAC CGGTAAAGAA
ATGACCGCCG CGCAAATTGT GGATGTGTTT CAGCAAGAAT ATTTTGGAGC TACGCAAGGG
TTTGAATATG TTGCGTGCCA CGTATCAGAC AGCAAAACTA TTGCAGAAGG CATGCAGGTT
GAGGTGGAGT TAGTTAAACA AGGTGAAGCG TTTACGGTTG TAGGTGAAGG CAGCGGCCCT
ATTGATGCCG CAGTAACGGC TATAAATAAA GTTGTACCTG CTGGAGTGAG CGTTGTGGAT
TATCACGAGC ATGCAGTTAG GGAGGGGGCC GATGGTGAAG CAGTGTGTTA TGTGGAGTTA
AAGGTGGGTA ATGGGCGGCC AGTGTTTGGG GTTGGGCGTC ATAAGAATAT TGTTGTTGCG
GCGGTTAGGG CGATGGTGGG GGGGGTAAAT CGAGCTAGCT AA
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| Protein sequence | MLAQPAQKYR PFKGAQLADR QWPNRTIEKP PIWMSTDLRD GNQALIDPMS VETKLTFFKE
IVAMNFKEIE IGFPSASDTD FQFTRRLIDE GHIPEDVTIE VLVQARKELI ERTVESVRGA
KRVIIHMYNP TAPSFRSIVY KTDKAGVKNI AVQGTKWVME ATAKAPEVEW VYQYSPEVFS
GTEIEFSKEV VDAVSATWQP TPENKMIINL PATVEMGTPN TYADQIEWMH RYIERRDSIV
LSVHPHNDRG TAVAAAELAV MAGADRVEGC LFGNGERTGN VDLVTLALNL YTQGVHPGLD
FSDIDKVRKL VETCNQIPVH PRHPYAGELV FTAFSGSHQD AIKKGFAQRK DGEIWEVPYL
PIDPKDLNRD YDAVVRVNSQ SGKGGVSFLL QQKAGLELPR RLQIEFSGIV QKINDETGKE
MTAAQIVDVF QQEYFGATQG FEYVACHVSD SKTIAEGMQV EVELVKQGEA FTVVGEGSGP
IDAAVTAINK VVPAGVSVVD YHEHAVREGA DGEAVCYVEL KVGNGRPVFG VGRHKNIVVA
AVRAMVGGVN RAS
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