| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2269 |
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| Symbol | |
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| ID | 3967945 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 2881017 |
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| End bp | 2884136 |
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| Gene Length | 3120 bp |
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| Protein Length | 1039 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637921360 |
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| Product | RND family efflux transporter |
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| Protein accession | YP_527741 |
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| Protein GI | 90021914 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGAGT GGTTTTGTAA AAATCATGTA GCTGCAAACC TATTACTGCT TGCGGTGGTG
CTTGCGGGTT TATTTTCGCT AACTAGCCGC ATCCCGTTAG AGATTTTCCC TACCGTCGAA
TCCAACGTTG TGCAGGTAAA CATTACCCTG CGAGGCGCCA CACCTGAAGA CGCTGAGCTG
GCTATTGCTA CACGTATAGA AGAAGCGGTA CAAGATTTAG AAGGCATAGA AGAAATTGTT
AGTCGCTCTA CCGAAGGTGG TGCAAGCATT GCGATAGAGG TGGAATCGAG CTACGACCCT
CGCATTTTAC TCGACGAAGT GAAAAGCAGA GTGGATTCCA TTAACACCCT ACCCAGTGAC
GCCGAACGCC CCATTATTTC CCTCGCGGTG CGAAAGCGCG ACGTAATGAT GGTGACGGTA
TCTGGTGACG TAAGTGAACG AGAAATTCGC GAGCAAGTAG AGCAAGTACG CAACGAGCTT
TTGCTACTAC CCAATGTGAG CCAGGTAGAC CTTAATGGCG TGCGCGACTA CGAAATAGCC
ATAGAATTAA GCCAAGATAG CTTGCGCGAA TATGGCTTAA CCTTAAGCCA AGTATCGAAT
GCCATTACTC AAAGCTCGCT AGATTTATCT GCCGGTAACA TTCGTACCGA CGGTGGCGAT
ATCCTTATTC GCTCGAAGGG CCAAGCCTAC AACAAGCACG AATTCGACCA AATAGTTTTA
AAAACCCATA GAGACGGCAC CCTTCTTAAG CTTGGCGATA TAGCCACCGT AACAGACGGC
TTTGAGGAAA CAGCCATACG CACTCGCTTT AACGGCAAAC TCGCTGCAGG CTTGCGCGTA
TATCGAATTG GCAAACAAAG CGCCATTCAA GTCGCCAAGG AAGTGCGCGA ATACATTGAG
CAAAAACAAA CCACCATGCC CGAAGGCATG GAAATAAGCT ACTGGGATGA CGATTCCCAA
ATTGTAAAAA GCCGCATCAA AACACTCACT ACCAACGCTG TTCAGGGCGG TATTTTAGTT
TTATTGCTGC TTAGCTTGTT CTTGCGTCCG GCGGTGGCTT TTTGGGTGTT TATTGGTATT
CCTGTAAGTT TTCTGGGCGC CTTTTTTGTT ATGCCCTTTA TTGGCGTAAC CCTAAACCTT
ATTAGCCTGT TCGCATTTAT TGTGGTGCTG GGGATTGTGG TCGACGATGC AATTGTAACC
GGTGAAAATA TATACACCCA CTTGCGATCC TCCGAGTCGG GCCTTGCAGC CGCCATAAAT
GGCACCAAAG AAGTCGCGGT GCCCGTTACC TTTGGTGTGC TCACCACCGT AGCGGCGTTT
GTGCCATTAT TTTTTATGGG CGGCGACCGC GGCCCGGTGT TTGCGCAAAT TCCGGCAATT
GTGATTCCTG TATTATTGTT TTCGCTTATT GAATCGAAGC TGGTTTTACC GGCGCATTTA
AAATACCTAA AAATCAAAAA AGACCATCAA CCCAACAAAC TTGAAAGAAT TCAGCAGAAT
ATTGCCAACG GCTTTGAGCG AGCCATCTTA AAATACTACC AACCAGCCCT TAAGGTTTGT
ACAAATAACA GGCTAATCAC CGTAACCTGC TTTGTAGGCA TTCTAGCGTG TATCAGTACT
GCAGTTTACG TTGGACACTC CAAATTTACT TTCTTCCCTC GTATACCCAG CGAGACAGTG
CGCGTTAACC TCACCCTGCC CACAGGCACG CCTTTTGAGG TTACCGACCA GTATGTACAA
ACAATCACGG GCCATGCCCG CAGCCTTAAA GAGAAGTACG TTGACGAAAA CGGTCAAAGT
ATCATTCTTA ACATTCTATC TATGACAGGT GGACGCGGTG GCGCCTCCCA CCAAGGTGAG
GTGCGATTTG AGATTTCACC ACCAGAAAGC AGAAAGTCCA CCATTACCAG CCGAGAGCTT
TCGCGAGAGT GGCGAGAGCT AATAGGTGAG ATTCCAGGCG CAGAAGCCCT TACCTTCCGC
GCAGAAATTG GCCGCACCAG CGACCCCATC GATATACAGC TGCGATCCAA CAACTTTCAA
GAGCTAGAAA TCGTATCTGA CAAAATCAAA GAAAGGCTCA CCACCTACGC CCCAGTGTTT
GATATCAACG ACAGTTTGGC AGACGGTAAA GAAGAACTGC GTATAGAGCT AAAACCAGAG
GCTTATTTAC TTGGAGTAAA CAGAGCCGAA GTTGTACAGC AGGTGCGGCA AGCATTCTTT
GGTGTGCAAG CGCAACGCAT CCAACGTGGG CGTGATGATG TACGAGTGAT GGTGCGCTTC
CCTCGAGAAG AGCGCGAGTC GATTGCACAC TTAAACAACA TGCTAATTCG CACACCTAGC
GGCCAACAGG TGCCCTTTAG CCATATTGCT GAATACACGC CATCGCAAAG CCCTACCGCT
ATTTATCGCA TAGACGGCTA CAGAACTGTC AACGTGCGGG CTGATGTAGA TAAACAAGCC
GCTAATATGA CTGTTTTACA GTCAGACTTA GAAAAGTACG TTGCCAGTCT CGTGGCTCAA
TACCCAGGCA TGAGCTACAA AATGGGCGGC GAAAGCGAAG AGCAGCGCGA ATCATTCACC
TCGCTCTACT GGGGTATAGG TGCCGTAATA TTGGTTATCT ATGCCCTACT CGCCATTCCA
TTTGGCTCGT ACTCTCAGCC GCTTATCGTT ATGTCCATCA TCCCTTTCGG CCTTATAGGG
GCTATCGTGG GCCACTGGAT AATGCGTATG GATTTAACCA TTATGAGCAT GCTCGGTATG
CTTGCGCTTA TTGGCATAAT CGTGAACGAC TCATTAGTAC TGGTAGATTA CATTAATAAG
ATGCGTGCAC GGGGCATGGC ACTACGTGAA GCCGTGCTTA CGGCTGGCGC TGCTCGCTTT
AGGCCCGTAA TGCTTACATC GCTCACAACC TTTATTGGGT TAATGCCATT ACTGTTTGAA
AAAGCAACAC AAGCACAGTT CTTGATCCCC ATGGCTGTAT CGCTAGGCTT CGGTATTATA
TTCGCTACGT TTATTACCTT GATTCTCGTA CCCGTGAATT ATTTACTTAT GGAGAGTGCC
GGACGCTATT TCGCATGGCT AAAAGAGACG CTGCGCTCAA AATTAGCACT AAAGAGGTAA
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| Protein sequence | MIEWFCKNHV AANLLLLAVV LAGLFSLTSR IPLEIFPTVE SNVVQVNITL RGATPEDAEL
AIATRIEEAV QDLEGIEEIV SRSTEGGASI AIEVESSYDP RILLDEVKSR VDSINTLPSD
AERPIISLAV RKRDVMMVTV SGDVSEREIR EQVEQVRNEL LLLPNVSQVD LNGVRDYEIA
IELSQDSLRE YGLTLSQVSN AITQSSLDLS AGNIRTDGGD ILIRSKGQAY NKHEFDQIVL
KTHRDGTLLK LGDIATVTDG FEETAIRTRF NGKLAAGLRV YRIGKQSAIQ VAKEVREYIE
QKQTTMPEGM EISYWDDDSQ IVKSRIKTLT TNAVQGGILV LLLLSLFLRP AVAFWVFIGI
PVSFLGAFFV MPFIGVTLNL ISLFAFIVVL GIVVDDAIVT GENIYTHLRS SESGLAAAIN
GTKEVAVPVT FGVLTTVAAF VPLFFMGGDR GPVFAQIPAI VIPVLLFSLI ESKLVLPAHL
KYLKIKKDHQ PNKLERIQQN IANGFERAIL KYYQPALKVC TNNRLITVTC FVGILACIST
AVYVGHSKFT FFPRIPSETV RVNLTLPTGT PFEVTDQYVQ TITGHARSLK EKYVDENGQS
IILNILSMTG GRGGASHQGE VRFEISPPES RKSTITSREL SREWRELIGE IPGAEALTFR
AEIGRTSDPI DIQLRSNNFQ ELEIVSDKIK ERLTTYAPVF DINDSLADGK EELRIELKPE
AYLLGVNRAE VVQQVRQAFF GVQAQRIQRG RDDVRVMVRF PREERESIAH LNNMLIRTPS
GQQVPFSHIA EYTPSQSPTA IYRIDGYRTV NVRADVDKQA ANMTVLQSDL EKYVASLVAQ
YPGMSYKMGG ESEEQRESFT SLYWGIGAVI LVIYALLAIP FGSYSQPLIV MSIIPFGLIG
AIVGHWIMRM DLTIMSMLGM LALIGIIVND SLVLVDYINK MRARGMALRE AVLTAGAARF
RPVMLTSLTT FIGLMPLLFE KATQAQFLIP MAVSLGFGII FATFITLILV PVNYLLMESA
GRYFAWLKET LRSKLALKR
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