| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2266 |
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| Symbol | |
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| ID | 3967942 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 2876397 |
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| End bp | 2878160 |
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| Gene Length | 1764 bp |
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| Protein Length | 587 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637921357 |
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| Product | regulatory proteins, AsnC/Lrp |
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| Protein accession | YP_527738 |
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| Protein GI | 90021911 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1116] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component |
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| TIGRFAM ID | [TIGR01184] nitrate transport ATP-binding subunits C and D |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.278164 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTTCT GCGAAATAAA AAATCTGTGT AAAAGCTACG GTGAAGGTAG CAACAAGACT
GCTGTTCTAA ACGACATAAA CCTTTCGATA GAAGAAGGCG AGTTTGTTGC CATTGTAGGG
TTTTCGGGCA GCGGTAAAAC CACCTTGGTC TCAGCCTTAG CAGGGCTACT CGAAGGCGAT
AGCGGCGAAA TACTCTTTAA AGGCAAGCCC GTAACAGGCC CCTCGCCAGA GCGTGGCATT
GTATTTCAAA GCTACTCGCT TATGCCTTGG CTTACCGTAT TCGACAACAT TGCACTTGCA
GTGGATCAAG TGTTTTGTTC TTGGCCTAAA TCAAAGCGCA AGGCCCATGT GCAGAAGTAT
ATTGACATGG TGAGCTTGTC GCACGCTACA GATCGCCGCC CAGCAGAGCT ATCTGGCGGC
ATGCGTCAAA GGGTATCGGT TGCTCGCGCG CTAGCCATGC AACCAGAAAT GCTCCTGCTC
GATGAACCGC TTTCTGCACT AGACGCCCTA ACCCGCGCCA ACCTGCAAGA TGAGCTAAAT
ATTATTTCGC AGAAAGAAAA GAAAACGATT TTGCTAATTA CCAACGATGT GGACGAAGCG
ATTCTTCTTG CGGACAGGGT TATACCTTTA AACCCCGGCC CCAAAGCATC GCTTGGCCCA
GAGTTTGTAA TTAACATACC ACGCCCGCGC GATCGCACAG CGATGAACCA CGATGAAGAA
TTTAAGTTCC TCCGCAAAGA AATCACCTCC TACCTAATGA AAGTAGGCAT GGAGGCAGCA
GGCAACGACG ACTCGAAAAC CCTGCCAGAC TTACAACCCA ATACGTCGTT TCCACCTAAT
GATGCAGCTA AACAAGCGGC GCTCGCTACA TCGCCGGCGT TAAATAAATA CGTGGAATTT
TCGCAAGTTA CAAAAATTTA CCCTACTCCC AAAGGGCCAT TAACAGTAGT CGATGAGTTC
GACCTGAAAA TGAAAAAAGG CGAGTTTATA TCCCTAATTG ATCACTCTGG CTGCGGTAAG
TCCACGGTAC TTTCTATGGT TGCCGGCCTT AATGATATTA GCGGCGGCGG TATCATTTTA
GATGGCAAGG AAGTTACTGG CGCTGGCCCC GATCGCGGCG TTGTGTTCCA AGCCCCGAGT
TTATTCCCTT GGCTAACGGC AAAAGAAAAC GTAAAACTTG GTGTAGAGCG TGTTTATCCG
CACGGCACCA AAAAAGAACG CGACGAAATA GTTGAATATT ACTTATCCCG CGTAGGGCTT
GCAGACTCTA TGGATAAGAA AGCCGCCGAG CTTTCTAACG GTATGAAGCA ACGCGTAGGT
ATTGCCCGCG CATTTGCGCT CTCGCCCAAG CTCCTACTGC TTGACGAACC CTTCGGTATG
CTAGATTCAC TCACGCGTTG GGAGCTACAA GAAGTGTTAA TGGAGGTATG GAAACGCACT
CAAGTTACCG CAATATGCGT AACTCACGAT GTCGACGAAG CCATACTGCT AGCTGACCGA
GTAGTAATGA TGACTAACGG GCCAAACGCA AAAGTGGGCA AAATTTTAGA GGTAGATTTA
CCTCGCCCAC GCACCCGTAA GCAGTTGCTA GAACACCCTG ATTACTATCG ATTACGCGAA
GAACTATTAA CTTTCTTAGC CGATTGCGAC AAAGAACACG ACGATTCAGA TACACCAGAA
CCACAGGAGA AGGAAATTTC ACAAGAAACA GATTCCGCAC CTACAGCACA GAGCCAAGAA
GACCGCCTTG CTGTAAACGC ATAA
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| Protein sequence | MAFCEIKNLC KSYGEGSNKT AVLNDINLSI EEGEFVAIVG FSGSGKTTLV SALAGLLEGD
SGEILFKGKP VTGPSPERGI VFQSYSLMPW LTVFDNIALA VDQVFCSWPK SKRKAHVQKY
IDMVSLSHAT DRRPAELSGG MRQRVSVARA LAMQPEMLLL DEPLSALDAL TRANLQDELN
IISQKEKKTI LLITNDVDEA ILLADRVIPL NPGPKASLGP EFVINIPRPR DRTAMNHDEE
FKFLRKEITS YLMKVGMEAA GNDDSKTLPD LQPNTSFPPN DAAKQAALAT SPALNKYVEF
SQVTKIYPTP KGPLTVVDEF DLKMKKGEFI SLIDHSGCGK STVLSMVAGL NDISGGGIIL
DGKEVTGAGP DRGVVFQAPS LFPWLTAKEN VKLGVERVYP HGTKKERDEI VEYYLSRVGL
ADSMDKKAAE LSNGMKQRVG IARAFALSPK LLLLDEPFGM LDSLTRWELQ EVLMEVWKRT
QVTAICVTHD VDEAILLADR VVMMTNGPNA KVGKILEVDL PRPRTRKQLL EHPDYYRLRE
ELLTFLADCD KEHDDSDTPE PQEKEISQET DSAPTAQSQE DRLAVNA
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