Gene Sde_2258 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2258 
Symbol 
ID3967934 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand- 
Start bp2865720 
End bp2866358 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content49% 
IMG OID637921349 
Productpyridoxamine 5'-phosphate oxidase 
Protein accessionYP_527730 
Protein GI90021903 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0259] Pyridoxamine-phosphate oxidase 
TIGRFAM ID[TIGR00558] pyridoxamine-phosphate oxidase 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.182808 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.591941 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGATATCAC TAGAAGACAT TCGTCGCGAT TATTTGTTAG GCGGATTGGA CCTAGACCAG 
CTGGATGCGA GCCCAATAGC TCAATTTGAG ACTTGGATGG CGCAGGCTAT AGAGAGCCAA 
ATACCAGACC CGACAGCTAT GGTGTTAGCC ACGGCTAATA AAGACGGGTT TCCATCACAG 
CGTATTGTGT TACTTAAAAA GTTAGACGAA CAAGGTTTTG TTTTTTTTAC TAATTACGGC 
AGTCGTAAGG CGCAAGAAAT TGCGGAGCAG TCGCACGTGA GTTTGCATTT TCCGTGGCAC 
ATGATGGAGC GGCAGGTGAG TGTTGGCGGT GTGGCAAGTA AAATATCCTA TGCGGAAACG 
CTAAAATATT TTGTAAGTCG ACCCAAAGAT AGCCAAATTG CCGCGTGGGC CTCTGCACAG 
AGCAAGCCTA TTAGCTCGCG CCAATTACTC TTACAGCAAT TTAATGCCAT TAAAACCAAG 
TTCGCCAACG GCGAAGTGCC GCTGCCCGAT TTTTGGGGTG GTTATCGCGT TGTGCCACAG 
CGAATGGAAT TTTGGCAAGG CGGCGGCGCG CGTTTGCACG ATCGCTTTGT GTATGAGCGA 
GAAGGCAATA GCTGGGCGAT TAACCGCTTA GCGCCTTAA
 
Protein sequence
MISLEDIRRD YLLGGLDLDQ LDASPIAQFE TWMAQAIESQ IPDPTAMVLA TANKDGFPSQ 
RIVLLKKLDE QGFVFFTNYG SRKAQEIAEQ SHVSLHFPWH MMERQVSVGG VASKISYAET 
LKYFVSRPKD SQIAAWASAQ SKPISSRQLL LQQFNAIKTK FANGEVPLPD FWGGYRVVPQ 
RMEFWQGGGA RLHDRFVYER EGNSWAINRL AP