| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2251 |
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| Symbol | algU |
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| ID | 3967927 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2858569 |
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| End bp | 2859150 |
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| Gene Length | 582 bp |
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| Protein Length | 193 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637921342 |
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| Product | RNA polymerase sigma factor AlgU |
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| Protein accession | YP_527723 |
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| Protein GI | 90021896 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000000000015974 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.140687 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACAGCGC AAACTGCGCA GGATTCAGAT CATCAACTTG TGTTGCGTGT GCAGAAGGGC
GATAAACGCG CTTTTGACAT GCTTGTTATT AAATATCAGC ACAAGATTTT ATCGATTATT
AGCCGTTACA TTAAAGATAA CGCTGAGATC CACGATGTTG CACAGGAAGC TTTTATTAAG
GCTTATCGTG CTATTGGCAA TTTCCGTGGC GATAGCGCGT TTTATACGTG GATCTACCGC
ATTGCTATTA ATACAGCAAA AAACTATTTA GTATCTCGCG GGCGGAGGCC GCCATCGAGT
GATGTAGATG TAGAAGATGC CGAGTTTTAT TCGGGCAGCG ACAGCCTTAA AGATGTGGAT
ACTCCAGAAA ACCATGCAAT GCGCGATCAG CTGGAGACAG TAGTAAATAA TGCTATCAAA
GCTCTGCCAG AGGATTTGCG TACTGCAGTG ACTCTGAGGG AGATGGAAGG GCTAAGTTAC
GAAGAAATTG CCGAAGTAAT GAGTTGCCCT GTGGGTACGG TTCGGTCGCG TATTTTTCGC
GCTCGGGAAG CCATTGATAA AGAAATTGCA CCATTGCTGT GA
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| Protein sequence | MTAQTAQDSD HQLVLRVQKG DKRAFDMLVI KYQHKILSII SRYIKDNAEI HDVAQEAFIK
AYRAIGNFRG DSAFYTWIYR IAINTAKNYL VSRGRRPPSS DVDVEDAEFY SGSDSLKDVD
TPENHAMRDQ LETVVNNAIK ALPEDLRTAV TLREMEGLSY EEIAEVMSCP VGTVRSRIFR
AREAIDKEIA PLL
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