Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2246 |
Symbol | |
ID | 3967922 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 2852574 |
End bp | 2854373 |
Gene Length | 1800 bp |
Protein Length | 599 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637921337 |
Product | GTP-binding protein LepA |
Protein accession | YP_527718 |
Protein GI | 90021891 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0481] Membrane GTPase LepA |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR01393] GTP-binding protein LepA |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0193182 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACAGATT TAAGTCATAT TCGAAACTTT TCCATCATTG CCCATATTGA TCATGGTAAA TCCACTCTAG CCGACAGGTT TATTCAGCAC TGTGGCGGCT TATCTGCTCG CGAAATGGAA GCCCAAGTAC TGGACTCCAT GGATATCGAG CGAGAGCGCG GTATTACAAT CAAGGCGCAA AGTGTAACGC TGTCCTATAC CTCCAAAAGT GGCAAGGTAT ATCAATTAAA CTTTATTGAT ACCCCAGGGC ACGTGGATTT CTCCTACGAA GTATCTCGCT CACTTGCTGC ATGTGAAGGT GCACTGCTAG TGGTTGATGC TGCACAAGGC GTAGAGGCTC AGTCTGTAGC TAACTGCTAT ACCGCGCTTG ATCAAGGCCT AGAAGTTATT CCTGTACTGA ATAAAATCGA CCTGCCGCAA GCAGAGCCAG AGCGAGTAGC CAGCGAAATT GAAGACATTA TTGGTATCGA TGCCACTGAT GCCGTGCGCT GTAGCGCTAA ATCGGGCCTT GGTATAGAAG ATGTGCTGGA AGTGCTCATT AAGTCTGTAC CTGCACCTGT GGGTGATATC GACGCACCTT TGCAAGCCTT AATTATCGAC TCTTGGTTTG ATAACTACCT TGGCGTAGTG TCTTTGGTGC GTGTGACTCA GGGTTGCTTA AAGACTAAAG ATAAAATCAT ATTGAAGAGC TTGGGCAAGC CTCATGTAGT CGATATGGTG GGCGTATTTA CGCCAAAGCG TAAAGAAACA GGCATTTTAA AAGCTGGTGA AGTGGGTTTT GTTGTTGCTG GTATTAAAGA AATATTAGGT GCGCCAGTTG GCGATACCAT TACTCATGCA TCTACAAGCA CCGTTCCTCA GTTGCCTGGC TTCAAAAAGG TTAAGCCTCA AGTTTACGCG GGCTTGTTCC CAGTAAGTTC AGACGATTAC GAAAACTTTC GTGATGCGTT GGGTAAGTTA ACTTTAAACG ACGCTTCTCT GTTTTACGAA CCCGAAAGCT CTGAAGCATT AGGCTTTGGT TTTCGATGTG GTTTCTTGGG TATGCTCCAC ATGGAGATTA TTCAAGAGCG CTTGGAGCGT GAGTACGACT TAGACCTGAT TACAACTGCA CCTACAGTAA TATATGAAGT AGAGAAAAAC GACGGTAGCG TTGTGTACGT AGATAACCCG TCTAAGTTAC CAGATTTAGG CACTATTGCG GAAATGCGAG AGCCTATAGT TGAAGCCAAT ATGCTAATGC CGCAGGCATA CCTAGGTGCA GTAATTACCT TGTGTATTGA AAAGCGCGGT GTGCAAAAAG ATATGCAATA TCTGGGTGGT CAGGTTGCAT TGAAGTACGA GCTGCCTATG GCAGAGGTTG TGCTCGATTT CTTCGATAAG CTTAAATCTG TAAGCCGTGG TTTTGCATCC TTAGATTACA ATTTCGTGCG CTTTGAGGCG GCCAAGCTTG TACGCCTAGA TGTACTTATT AATAGTGAAA AAGTAGATGC TTTGGCGCTT ATTGTTCATC GTGATACTGC ACAATATAAA GGTCGCTCAC TTGCGGATAA GATGAAAGAG CTTATTCCTC GGCAGATGTT TGATGTGGCT ATTCAGGCGG CTATTGGTGG CCAAGTGGTG GCTCGTACCA CGGTGAAGGC GCTGCGCAAA AACGTAATTG CAAAATGTTA TGGCGGCGAC GTTTCTCGAA AGAAGAAATT GCTAGAGAAG CAAAAAGCCG GTAAAAAACG TATGAAGCAG GTGGGGCGTG TAGAAATTCC GCAAGAGGCT TTCTTAGCTG TGCTCAAGGT AGATAGCTAA
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Protein sequence | MTDLSHIRNF SIIAHIDHGK STLADRFIQH CGGLSAREME AQVLDSMDIE RERGITIKAQ SVTLSYTSKS GKVYQLNFID TPGHVDFSYE VSRSLAACEG ALLVVDAAQG VEAQSVANCY TALDQGLEVI PVLNKIDLPQ AEPERVASEI EDIIGIDATD AVRCSAKSGL GIEDVLEVLI KSVPAPVGDI DAPLQALIID SWFDNYLGVV SLVRVTQGCL KTKDKIILKS LGKPHVVDMV GVFTPKRKET GILKAGEVGF VVAGIKEILG APVGDTITHA STSTVPQLPG FKKVKPQVYA GLFPVSSDDY ENFRDALGKL TLNDASLFYE PESSEALGFG FRCGFLGMLH MEIIQERLER EYDLDLITTA PTVIYEVEKN DGSVVYVDNP SKLPDLGTIA EMREPIVEAN MLMPQAYLGA VITLCIEKRG VQKDMQYLGG QVALKYELPM AEVVLDFFDK LKSVSRGFAS LDYNFVRFEA AKLVRLDVLI NSEKVDALAL IVHRDTAQYK GRSLADKMKE LIPRQMFDVA IQAAIGGQVV ARTTVKALRK NVIAKCYGGD VSRKKKLLEK QKAGKKRMKQ VGRVEIPQEA FLAVLKVDS
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