Gene Sde_2246 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2246 
Symbol 
ID3967922 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp2852574 
End bp2854373 
Gene Length1800 bp 
Protein Length599 aa 
Translation table11 
GC content45% 
IMG OID637921337 
ProductGTP-binding protein LepA 
Protein accessionYP_527718 
Protein GI90021891 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0481] Membrane GTPase LepA 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR01393] GTP-binding protein LepA 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0193182 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACAGATT TAAGTCATAT TCGAAACTTT TCCATCATTG CCCATATTGA TCATGGTAAA 
TCCACTCTAG CCGACAGGTT TATTCAGCAC TGTGGCGGCT TATCTGCTCG CGAAATGGAA
GCCCAAGTAC TGGACTCCAT GGATATCGAG CGAGAGCGCG GTATTACAAT CAAGGCGCAA
AGTGTAACGC TGTCCTATAC CTCCAAAAGT GGCAAGGTAT ATCAATTAAA CTTTATTGAT
ACCCCAGGGC ACGTGGATTT CTCCTACGAA GTATCTCGCT CACTTGCTGC ATGTGAAGGT
GCACTGCTAG TGGTTGATGC TGCACAAGGC GTAGAGGCTC AGTCTGTAGC TAACTGCTAT
ACCGCGCTTG ATCAAGGCCT AGAAGTTATT CCTGTACTGA ATAAAATCGA CCTGCCGCAA
GCAGAGCCAG AGCGAGTAGC CAGCGAAATT GAAGACATTA TTGGTATCGA TGCCACTGAT
GCCGTGCGCT GTAGCGCTAA ATCGGGCCTT GGTATAGAAG ATGTGCTGGA AGTGCTCATT
AAGTCTGTAC CTGCACCTGT GGGTGATATC GACGCACCTT TGCAAGCCTT AATTATCGAC
TCTTGGTTTG ATAACTACCT TGGCGTAGTG TCTTTGGTGC GTGTGACTCA GGGTTGCTTA
AAGACTAAAG ATAAAATCAT ATTGAAGAGC TTGGGCAAGC CTCATGTAGT CGATATGGTG
GGCGTATTTA CGCCAAAGCG TAAAGAAACA GGCATTTTAA AAGCTGGTGA AGTGGGTTTT
GTTGTTGCTG GTATTAAAGA AATATTAGGT GCGCCAGTTG GCGATACCAT TACTCATGCA
TCTACAAGCA CCGTTCCTCA GTTGCCTGGC TTCAAAAAGG TTAAGCCTCA AGTTTACGCG
GGCTTGTTCC CAGTAAGTTC AGACGATTAC GAAAACTTTC GTGATGCGTT GGGTAAGTTA
ACTTTAAACG ACGCTTCTCT GTTTTACGAA CCCGAAAGCT CTGAAGCATT AGGCTTTGGT
TTTCGATGTG GTTTCTTGGG TATGCTCCAC ATGGAGATTA TTCAAGAGCG CTTGGAGCGT
GAGTACGACT TAGACCTGAT TACAACTGCA CCTACAGTAA TATATGAAGT AGAGAAAAAC
GACGGTAGCG TTGTGTACGT AGATAACCCG TCTAAGTTAC CAGATTTAGG CACTATTGCG
GAAATGCGAG AGCCTATAGT TGAAGCCAAT ATGCTAATGC CGCAGGCATA CCTAGGTGCA
GTAATTACCT TGTGTATTGA AAAGCGCGGT GTGCAAAAAG ATATGCAATA TCTGGGTGGT
CAGGTTGCAT TGAAGTACGA GCTGCCTATG GCAGAGGTTG TGCTCGATTT CTTCGATAAG
CTTAAATCTG TAAGCCGTGG TTTTGCATCC TTAGATTACA ATTTCGTGCG CTTTGAGGCG
GCCAAGCTTG TACGCCTAGA TGTACTTATT AATAGTGAAA AAGTAGATGC TTTGGCGCTT
ATTGTTCATC GTGATACTGC ACAATATAAA GGTCGCTCAC TTGCGGATAA GATGAAAGAG
CTTATTCCTC GGCAGATGTT TGATGTGGCT ATTCAGGCGG CTATTGGTGG CCAAGTGGTG
GCTCGTACCA CGGTGAAGGC GCTGCGCAAA AACGTAATTG CAAAATGTTA TGGCGGCGAC
GTTTCTCGAA AGAAGAAATT GCTAGAGAAG CAAAAAGCCG GTAAAAAACG TATGAAGCAG
GTGGGGCGTG TAGAAATTCC GCAAGAGGCT TTCTTAGCTG TGCTCAAGGT AGATAGCTAA
 
Protein sequence
MTDLSHIRNF SIIAHIDHGK STLADRFIQH CGGLSAREME AQVLDSMDIE RERGITIKAQ 
SVTLSYTSKS GKVYQLNFID TPGHVDFSYE VSRSLAACEG ALLVVDAAQG VEAQSVANCY
TALDQGLEVI PVLNKIDLPQ AEPERVASEI EDIIGIDATD AVRCSAKSGL GIEDVLEVLI
KSVPAPVGDI DAPLQALIID SWFDNYLGVV SLVRVTQGCL KTKDKIILKS LGKPHVVDMV
GVFTPKRKET GILKAGEVGF VVAGIKEILG APVGDTITHA STSTVPQLPG FKKVKPQVYA
GLFPVSSDDY ENFRDALGKL TLNDASLFYE PESSEALGFG FRCGFLGMLH MEIIQERLER
EYDLDLITTA PTVIYEVEKN DGSVVYVDNP SKLPDLGTIA EMREPIVEAN MLMPQAYLGA
VITLCIEKRG VQKDMQYLGG QVALKYELPM AEVVLDFFDK LKSVSRGFAS LDYNFVRFEA
AKLVRLDVLI NSEKVDALAL IVHRDTAQYK GRSLADKMKE LIPRQMFDVA IQAAIGGQVV
ARTTVKALRK NVIAKCYGGD VSRKKKLLEK QKAGKKRMKQ VGRVEIPQEA FLAVLKVDS