| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2238 |
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| Symbol | |
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| ID | 3964842 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2842346 |
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| End bp | 2844586 |
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| Gene Length | 2241 bp |
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| Protein Length | 746 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637921329 |
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| Product | GTP diphosphokinase |
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| Protein accession | YP_527710 |
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| Protein GI | 90021883 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.338893 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000119577 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGTACAAG TTAGAGTAGA TAAGCCACTT ACATCGTCTG GGGAATTGGA CGTAGATGCA
TGGATAGAGC GCCTGCGCGA TCTTTCTGAA ATAGATGATG ATGGCAAAAA AGCTCTCGCA
TTAGCATGCG AAAAAGTAAT CGAAGTTGAA GGGCTGCCCG GTGATAAGTT AACCGGTTGG
GGCGAGGGGT ATACCACCCT TAACGCCGGG CTGGATATGG CAGAAATTCT GGCCGAATTA
CAGTTGGATG CAGAATCTTT AACTGCCGCG TTACTTTATC GCAGTGTTCG CGAAAATAAA
ATTTCTACGG AAGTGGTGAA TGAGCTTTTT GGTCGAGGAG TGCACCGTTT AATTGATGGT
GTACGACAGA TGGCGGCTAT CAGTGGGCTC ACCAATCACT CTGGCGAATC TGTTTTTGGG
CAGGAGTCTG CAGAGCAGGC TGAAAATGTT CGTAAAATGC TGGTTGCCAT GGTTGATGAT
GTTCGCGTCG CGCTTATCAA GCTGGCTGAG CGAACCTGTG CAATTCGCGC CGTTAAAAAA
GCCCCTTTAG AAAAGCGTCA GCGTGTAGCG CATGAAGTGG CTGATATATA CGCTCCACTT
GCTCACCGTT TAGGTATTGG TCATATAAAA TGGGAGCTAG AAGACCTTTC TTTTAGGTAT
TTGCGCCCAT ACGATTACAA ATATATAGCT AAGTTATTAG ATGAACGCAG GCTAGACCGA
CAAGAATATA TTGAAAATGT TATTGGCATA ATTAAAACCC AATTATCAGC CGAAGCTATT
GAGGCAGATG TGTTTGGACG GGCCAAGCAC ATTTACAGTA TCTGGCGCAA AATGCGCAAA
AAAAATATCG ACTTCTCGCA GGTTTACGAT ATTCGTGCAA TTCGGATTTT AGTTAATACC
GAGCGTGAAT GTTACACCGT GCTGGGTATA GTGCATGCTT TGTGGCGCAA TATTCCCTTG
GAGTTCGATG ATTATATTGC TAACCCTAAA GAAAATGGCT ACCGCAGTCT TCATACTGCA
GTGCATGGCC CTGGCAGTAG GGTGCTAGAA GTTCAAATAC GCACAAAGGC AATGCACGAA
GAGGCCGAGT TTGGTGTATG TGCTCATTGG CGCTATAAAA ATGCAGAGAA AGGCGGTGCT
GAGGCCAGCT ACGAAGGTAA AATTGCTTGG CTGCGTCAAG TGCTTGAGTG GCACGAAGAA
GTGGGTGGCA GCCCTTGGGA TGATCACCTT ACCGCTAGCG TCGAGCAAGA CCGTATTTAC
CTGTTCACCC CAGAAGGGCA CGTAATAGAT TTACCTGAGG GGGCAACGCC GGTAGATTTT
GCATTCCGTA TCCACTCGGA TGTTGGCTTG CGTTGCCGTG GAGCCAAAAT AAATGGGCGC
ATAGTCCCAC TTAACCACCC CTTAAAAACC GCAGATCAAG TAGAAATACT AACCGGTAAG
CGCGAGTCAC CTAGCCGAGA CTGGCTTAAC CCTGCGCTTG GGTACATCAC AACATCTCGA
GCACGCGCAC GATTGCACCA GTGGTTTAAG CTGCAAGATC GGGATCAAAA TATCGCCGAC
GGCCGCGCAT TACTGGATAA AGAATTTAAG CGGTTGGCTG TTGAAGGCTT AGATTACGAC
AAGCTGCTTA AAAAATTAGG GCTTAAACAC CTCGATGACC TATATGCCGC TGTTGGCACT
GCCGATTACA GTGTAGATAA AGTTCTGAAT GCCGCGCAGC GACTTATTAG TGGTGATGAG
CCGGTTAACC CAGTTATCTC ACTTGTTGGT AAGGCATCGG TTGAAAAAGG TGGTCGCGAT
GTATTTATTG ATGGTGTTGG TAATTTAATG TCGCAGATTG CGCATTGCTG TCACCCCATT
CCTGGGGATC GCATTGTGGG TTACATCACA TTAGGGCGCG GAGTATCCAT TCACCGTCAA
GATTGCGGCA ACATTATGCA GCATCAGGCT AATGAGCCTA GTCGAATAAT TGCTGTAGAT
TGGGCCGAAG CACCTAAGCA GTTGTATTCA GCTGTAATTG CATTGGAAGC ATTTGATAGG
CACGGGCTGT TGCGTGATAT CACAACCTTG CTCGACCGAG AGCGAGTGAA TGTGAGTGCA
ATGCAAACTA TTTCAGACAA AGATAAAAAT ACTGTTGAAA TGACAATCAC CATTGAAATT
TCCGATTTCG GTGCATTGAG CCGTGTTTTT GCTAAATTGA GTCAATTGCC TAACGTGACG
GAAGTTCGCA GAAAGCACTA A
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| Protein sequence | MVQVRVDKPL TSSGELDVDA WIERLRDLSE IDDDGKKALA LACEKVIEVE GLPGDKLTGW
GEGYTTLNAG LDMAEILAEL QLDAESLTAA LLYRSVRENK ISTEVVNELF GRGVHRLIDG
VRQMAAISGL TNHSGESVFG QESAEQAENV RKMLVAMVDD VRVALIKLAE RTCAIRAVKK
APLEKRQRVA HEVADIYAPL AHRLGIGHIK WELEDLSFRY LRPYDYKYIA KLLDERRLDR
QEYIENVIGI IKTQLSAEAI EADVFGRAKH IYSIWRKMRK KNIDFSQVYD IRAIRILVNT
ERECYTVLGI VHALWRNIPL EFDDYIANPK ENGYRSLHTA VHGPGSRVLE VQIRTKAMHE
EAEFGVCAHW RYKNAEKGGA EASYEGKIAW LRQVLEWHEE VGGSPWDDHL TASVEQDRIY
LFTPEGHVID LPEGATPVDF AFRIHSDVGL RCRGAKINGR IVPLNHPLKT ADQVEILTGK
RESPSRDWLN PALGYITTSR ARARLHQWFK LQDRDQNIAD GRALLDKEFK RLAVEGLDYD
KLLKKLGLKH LDDLYAAVGT ADYSVDKVLN AAQRLISGDE PVNPVISLVG KASVEKGGRD
VFIDGVGNLM SQIAHCCHPI PGDRIVGYIT LGRGVSIHRQ DCGNIMQHQA NEPSRIIAVD
WAEAPKQLYS AVIALEAFDR HGLLRDITTL LDRERVNVSA MQTISDKDKN TVEMTITIEI
SDFGALSRVF AKLSQLPNVT EVRRKH
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