| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2224 |
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| Symbol | |
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| ID | 3965463 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2825516 |
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| End bp | 2827978 |
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| Gene Length | 2463 bp |
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| Protein Length | 820 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637921315 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_527696 |
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| Protein GI | 90021869 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.387705 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCAAGGTT TCTTTCAAGG TATATCGTTC CGCCTGGCAA AGGTGGGGAT TCTAATCGCG
CTGCTCGTGG GCAGTGTGAT GAGCGCGATT CAGATATATA TAGATTACCA AGTACAAACT
ACAGAAATTA ACCGCCAAAT ATCCAAAATT ACCGCCGTTT CCACCCCCCC AGCTGTTCGA
GCCGTTCACA CCCTAGATGC AAAATTAGCC GCCGAAGTTG CCACAGGCTT AATGCGCTAC
GATTTTATTA CGTCGGTAAC TATAAAAAAT GAGTTAGGCA CAGAGCTGGC GCAATTAAGC
AGAGAAACCC CAGCGTCTAA TACCAAATGG TTAACGCGAC AAATATCCAA TGAAGTATTG
CGCCATTCTG CGCCGTTATA CATGCCTACT GGCGGCGAAA ATGGCTATAT TACCTTCGAT
GTAAATATGG ATGCGGCCTA CGGCCAGTTT TATCAATCTA GTGCAGTGGT TATTGCGTTC
GGCTTAATTC GCAGTTCTTT GCTCGTATTT TTCTTGTTTA TTGCGTTTTA TTACCTGCTA
ACCAAACCGC TTATTCAAAT TGCTCTGCAG GTTAAACAAA TAAACCCAGG TAGCCCTGGC
GAGCAGCGAC TTTCGCGCCC TGCAGGTATA CATGACGATG AATTAACTCA GCTTGTAGCC
AGTACAAACC AGTTGCTCGA TGCGGTCGAT TTAGCGCTGG CCAAACGCCG AGCTGTTGAG
GTAGTACTGC GTAAAAGTGA AGAGCACGTA CGCCAAATTA TCGATAGCTT GCCCGTGTGG
GTAGGTGCGC GCAATAAAGA TGGCCATTAC ATATTTGCTA ACCAGGCACT GGCTGATTTC
TTACACACTA AGCCCGACGC AATGCGCGGC TCCCACATTA GTGATTTTGC CGAATTCTTT
GTTACCGATC CGCAGCAAAT TATCGATTTA GATGCAGAGG TCATTAAATC GCGAATAAGT
GCGCAAATTT GGGAAGAGAA ATGGATTACT AACGATGGTG AAGAGCGCGA TATGCACACC
CACGTTATGC CCATGGAATT CTATGACGAA GTGGTTTCGT TGGTTGTATC GTCTGATATT
ACTGAACTTA AGCGAACCCA AGCGCAAATG GAGCACATGG CGTATCACGA TGCGCTCACC
GATTTACCCA ATCGCAGTTA CCTTGTAGAG CGCTTAGAGG AAGAGGTGCG TAAGGCTAAT
CACGGCCAGT ACTACGGTGC GTTGCTCTTT ATCGATTTAG ACCAATTTAA ATACATCAAC
GACTCCCTCG GTCATCCGGC GGGTGATGGA GTGCTAAAAC ACGTTGCTCA ACGGTTAACC
GCAGTAACCA AAGAAAATGA TTTAGTTGTG CGCCTAGGGG GCGATGAATT CGTTGTTGTG
CTCACCAATC TAGGGGATGA GCTACCTACC TCGATATTAC GGGCAGAAGA TATAGGCGAA
CGCCTGCGCA GATATATTTC TGAGCCACAT TTTTATAACG ATTTACAACT TCACGTAACC
TGTAGTGTGG GTATTGTTAT GTACCCAGAA GAAGACGCAG GCGTGCATGA ATTGTTGCGT
TACGCCGATA CCGCTATGTA TCAGGTAAAA GAGCAGGGGC GTGATGCCAT TCAGTTCTTT
AACAAATACA TGGCAGATAA AGCGCGCAAT GTGCTGGTAA TGGAGGGTGA CCTACACAAA
GCGTTAGAGC AACACCGTTT TAGTTTGTAC TATCAGCCGC GCGTAGATGT TACCACCTCT
CAGATAGTGG GCGCAGAAGC ATTGTTACGC TGGGAGCACC CCGACAGAGG CATGATATCG
CCGGCAGAGT TTATACCCAT TTTAGAAACG TCTGGCCTTA TTGTAGAAGT TGGCCGTTGG
GTATTAGAAG ATTCAATTCG CCAAGTAAAA ATTTGGCAAG AGCAAGGTAT TTGGAAGGAC
GACATGCGCT TAGGGGTGAA TATTAGCCCG CGTCAGTTCC GGTCTTCTGA GTTTGTAAAT
GATGTAACCA AAATCCTGCA GGAAGTAGGT ATTAACCCCT CGTTGATTGA GATGGAAATT
ACAGAAGGCA TTGTTATTCA CAACCTAGAA GAAACGGTTG CTACTATGTC TAGTTTATGC
GAGCTAGGTA TTAATTTCGC GCTCGATGAT TTTGGTACGG GTTACTCATC AATTAGTTAT
TTAAAACAGT TGCCAGTTGC TATTTTGAAA GTAGATCAAA GCTTTGTGCG CGATATTACG
TTCGACCGTA ACGACAGGGT GCTTGTAGAA ACTATTAGCG CCATGGGTAA TATGTTGGGC
TTGGATGTAG TTGCTGAAGG GGTAGAAACC TGCGATCAGT TGCACTTGGT ACGCGAATAC
AACTGTAAGT ATTATCAAGG CTATTTGTGT AGCCCGCCTG TGAATGCGGA TGCCTTTGCG
GAGCTTTTAA CCACCAAAGA TATTACATGG GGCTGCGGAG CCAATAAGCG CGACGAAAAA
TAA
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| Protein sequence | MQGFFQGISF RLAKVGILIA LLVGSVMSAI QIYIDYQVQT TEINRQISKI TAVSTPPAVR
AVHTLDAKLA AEVATGLMRY DFITSVTIKN ELGTELAQLS RETPASNTKW LTRQISNEVL
RHSAPLYMPT GGENGYITFD VNMDAAYGQF YQSSAVVIAF GLIRSSLLVF FLFIAFYYLL
TKPLIQIALQ VKQINPGSPG EQRLSRPAGI HDDELTQLVA STNQLLDAVD LALAKRRAVE
VVLRKSEEHV RQIIDSLPVW VGARNKDGHY IFANQALADF LHTKPDAMRG SHISDFAEFF
VTDPQQIIDL DAEVIKSRIS AQIWEEKWIT NDGEERDMHT HVMPMEFYDE VVSLVVSSDI
TELKRTQAQM EHMAYHDALT DLPNRSYLVE RLEEEVRKAN HGQYYGALLF IDLDQFKYIN
DSLGHPAGDG VLKHVAQRLT AVTKENDLVV RLGGDEFVVV LTNLGDELPT SILRAEDIGE
RLRRYISEPH FYNDLQLHVT CSVGIVMYPE EDAGVHELLR YADTAMYQVK EQGRDAIQFF
NKYMADKARN VLVMEGDLHK ALEQHRFSLY YQPRVDVTTS QIVGAEALLR WEHPDRGMIS
PAEFIPILET SGLIVEVGRW VLEDSIRQVK IWQEQGIWKD DMRLGVNISP RQFRSSEFVN
DVTKILQEVG INPSLIEMEI TEGIVIHNLE ETVATMSSLC ELGINFALDD FGTGYSSISY
LKQLPVAILK VDQSFVRDIT FDRNDRVLVE TISAMGNMLG LDVVAEGVET CDQLHLVREY
NCKYYQGYLC SPPVNADAFA ELLTTKDITW GCGANKRDEK
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