Gene Sde_2220 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2220 
Symbol 
ID3965458 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp2821191 
End bp2821877 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content44% 
IMG OID637921310 
Producthypothetical protein 
Protein accessionYP_527692 
Protein GI90021865 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0463] Glycosyltransferases involved in cell wall biogenesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value0.556627 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGTTGT ACTCCGTTAT CATTCCAATT TTAAATGAAA GGGCAAAGCT GCCGAATTTA 
TGTGAAGCGC TATCACAGCT TACAGTGTGC GCAGCTGTAG AGTTTTTATT TGTAGATGGT
GGAAGCGAAG ATGGTAGCGT TGTATGGCTT AAACAAAATA ATTTTACTGT AATTACCGCA
CAAAAAGGGC GAGCTTACCA AATGAACGCT GGCGCGAAGT TGGCGCAAGG CGAGTGGTTG
ATATTCTTAC ACGCAGATAC GTCTATGCCT GCCACCTTTT TTACGGCATT GGCCGCTCAG
CCAAGTCATG TTGCATGGGG GCACGCGCGG GTAAAACTGG ATGATAATAC GCATATTGCT
CGTTGGGTAG AGCGAGGCAT TGCTTTTAGA ACGGCCATTA GTGGTGTGGC AACGGGTGAT
CAAACCCTTT TTGTAAGGCG TAATATTTTT AACGCGATGG GCGGTTATGA GCCTATTTTA
TTAATGGAGG ATGTGGCCTT AAGCTGCAAA CTTAATCGAT ACTACGATAA AGCTATTTTG
CCGGTAGAAG TCGTTACGTC TAGTAGAAAG TGGCGTAAAA ATGGGTACAT AAAAACCATT
ATATTAATGT GGTGTATACA ATTGGCCTAC GTGTGCGGGG TATCTACAAA TCGATTGCAT
CGATGGTATT ACGGGGGCCG CTTATGA
 
Protein sequence
MPLYSVIIPI LNERAKLPNL CEALSQLTVC AAVEFLFVDG GSEDGSVVWL KQNNFTVITA 
QKGRAYQMNA GAKLAQGEWL IFLHADTSMP ATFFTALAAQ PSHVAWGHAR VKLDDNTHIA
RWVERGIAFR TAISGVATGD QTLFVRRNIF NAMGGYEPIL LMEDVALSCK LNRYYDKAIL
PVEVVTSSRK WRKNGYIKTI ILMWCIQLAY VCGVSTNRLH RWYYGGRL