Gene Sde_2162 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2162 
Symbol 
ID3967546 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp2755593 
End bp2756393 
Gene Length801 bp 
Protein Length266 aa 
Translation table11 
GC content43% 
IMG OID637921252 
Productchemotaxis protein CheZ 
Protein accessionYP_527634 
Protein GI90021807 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG3143] Chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAACAC AACGTGATCT GCATAAAAAT GAGCAGTTTT TAACTGAGCT TGAAGATTGT 
GCGAAACAGC TAGTAGAGAA CCTCCAAAAC AATAATTTTG ACGGTGCTTC GGAGCTTATT
CACACCTTGG TAGAGGCGAG AGATCGTCAT ATTTTCCAGT CGGTGGGCCG ATTAACTCGC
GGCTTACATA ATGCCATTGT CAATTTTAAT GTCGATGCTG ACTTCGATAA TAATCCACCA
GAAATTAACA ACTCAGAAAT ACGCGATGCT TCAGATAGGC TTAACTACGT CATTAAAATG
ACTCAAGAAG CGGCCGATAA AACCATGGAT AAGGTAGAGT CCATTGCCCC AATAGCAATG
AACCTAGGGC AAGAGGCAAC GCTTTTAAGG GCAGATTGGC AAAAATTAAA ACGCCGTGAA
ATATCGAAAG AAGAGTTTAA AGTTTTATAC GATCGTATGG GCACATTTCT CGACCAAATG
GATATGGGCA CGCAAGAACT GAACAAATCC CTGCAAGATA TTATATTAGA GCAGGGCTAT
CAGGATCTTA CCGGCCAAGT ACTTAAAAAA GTGATTGGCT TGGTAACCGA TGTTGAAAGT
GAACTCGTGA ATTTAATGCG TATTGCGGGC GAGGTAGAAC ATGTAACGGG TATGGCAGGT
GGTGCCGATA CGGCTGCCAC TGGCAGCGGC GAAGCAAAAA ATTCAAAAGG TGAAGGCCCG
CAAATTCACG CAGAAACACG TGATGATGTG GTCTCGGGTC AAGATGATGT TGACGACCTT
TTATCTAGCC TGGGCTTTTG A
 
Protein sequence
METQRDLHKN EQFLTELEDC AKQLVENLQN NNFDGASELI HTLVEARDRH IFQSVGRLTR 
GLHNAIVNFN VDADFDNNPP EINNSEIRDA SDRLNYVIKM TQEAADKTMD KVESIAPIAM
NLGQEATLLR ADWQKLKRRE ISKEEFKVLY DRMGTFLDQM DMGTQELNKS LQDIILEQGY
QDLTGQVLKK VIGLVTDVES ELVNLMRIAG EVEHVTGMAG GADTAATGSG EAKNSKGEGP
QIHAETRDDV VSGQDDVDDL LSSLGF