| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2137 |
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| Symbol | rpsA |
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| ID | 3967521 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2727323 |
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| End bp | 2729005 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637921227 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_527609 |
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| Protein GI | 90021782 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.000133883 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAGAAA GCTTTGCAGA ACTCTTTGAA GAGAGTTTAA AAACCGTAGA TATGGTGCCA
GGTAGCATCG TAACAGGCGT AGTAATTGAC ATCGACCAAG ACTGGGTAAC AGTACACGCA
GGTCTTAAGT CTGAAGGCGT TATCCCAGCC GAGCAATTCT ACAACGATAA AGGCGAATTA
GAGCTAAGCA TCGGTGACGA AGTTCAAGTA GCTCTAGAGT CTGTAGAAGA TGGTTTCGGT
GAAACTCGTC TATCTCGCGA GAAAGCTAAG CGCGCTGAAT CTTGGAAAGT ATTGGAAGCA
GCACACGACG CAGAAGAAGT TATCACAGGT GTTATTAACG GTAAGGTTAA AGGTGGTTTC
ACCGTTGACG TTGCTGGTAT TCGCGCATTC TTGCCAGGTT CATTGGTAGA CGTACGTCCA
GTACGCGAAA CCACGCACCT AGAAGGCAAA GAGCTAGAAT TTAAAGTTAT CAAATTAGAT
CAACGTCGTA ACAACGTAGT TGTTTCTCGT CGTGCTGTTA TGGAGCAAGC AAACTCCGAA
GAGCGTGAAG AGTTGTTGGC TAACCTACAA GAAGGTATGG CTGTTAAAGG TATCGTTAAA
AACCTTACCG ATTACGGTGC TTTCGTTGAC TTGGGCGGCG TAGACGGCTT GTTGCACATC
ACCGATATGG CTTGGAAGCG CATTAAGCAC CCAAGCGAAA TTGTTGCTGT TGGGGATGAA
ATCGACGTTA AAGTATTGAA GTTCGATCGC GAGCGTAACC GTGTATCTCT TGGCCTTAAG
CAATTGGGTG AAGATCCATG GAGTGCAATC ACTCAGCGTT ACCCAGAAGG TGCCAAAGTT
AAGGCGCGCA TTACTAATCT TACCGACTAC GGCTGCTTCG CAGAAATCGA AGAAGGCGTT
GAAGGTTTGG TTCACGTATC CGAAATGGAT TGGACCAACA AAAACATCCA CCCATCTAAA
GTTGTTAGCT TGGGCGATGA AGTAGAAGTA ATGATTCTGG ATATCGACGA AGAGCGTCGT
CGTATTTCTT TGGGTATCAA GCAGTGTCAA GAAAACCCAT GGGATGCATT CTCTAACCAA
TTCGCTAAAG GCGACAAAAT CAGCGGTAAG ATCAAATCTA TCACTGATTT CGGTATCTTT
ATCGGCTTGG ACGGCGGCAT CGACGGTCTA GTTCACTTGT CTGATATTTC TTGGAACGAA
GCTGGCGAAG AAGCTGTGCG TAAGTTCAAG AAAGGCGACG AGATTGAAAC CGTTGTATTG
GCAATCGACC CAGAGCGCGA GCGCATTTCT TTAGGCGTTA AGCAATTAGA CGAAGATCCG
TTCTCTGCTT ATGTTGCAGA AAACGACAAA GGCACCATCG TAACGGGTAC TGTTAAAGAA
GTAGACGCTA AAGAAGCGGT TATTTTGTTG GCAGACGACA TTACTGGTAC TTTGAAAGCG
TCTGAAATTA GCCGCGATAA AGTAGAAGAT GCCCGTAACG TGCTTAAAGA AGGTGACGAA
GTAGAAGCTA AAATCACCAA TGTAGACCGC AAAAACCGTG CAATTATCTT AAGTGTTAAA
GCTAAAGATG TTGCAGACGA AAAAGCGGCT ATCAAAGAGC ACAGCACCAA AGCGGCAGAA
GCTGCACAGC CAGCTACCAT TGGCGACCTA ATCAAGGCCG AAATGGAAAA CAAAAACAGC
TAG
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| Protein sequence | MIESFAELFE ESLKTVDMVP GSIVTGVVID IDQDWVTVHA GLKSEGVIPA EQFYNDKGEL
ELSIGDEVQV ALESVEDGFG ETRLSREKAK RAESWKVLEA AHDAEEVITG VINGKVKGGF
TVDVAGIRAF LPGSLVDVRP VRETTHLEGK ELEFKVIKLD QRRNNVVVSR RAVMEQANSE
EREELLANLQ EGMAVKGIVK NLTDYGAFVD LGGVDGLLHI TDMAWKRIKH PSEIVAVGDE
IDVKVLKFDR ERNRVSLGLK QLGEDPWSAI TQRYPEGAKV KARITNLTDY GCFAEIEEGV
EGLVHVSEMD WTNKNIHPSK VVSLGDEVEV MILDIDEERR RISLGIKQCQ ENPWDAFSNQ
FAKGDKISGK IKSITDFGIF IGLDGGIDGL VHLSDISWNE AGEEAVRKFK KGDEIETVVL
AIDPERERIS LGVKQLDEDP FSAYVAENDK GTIVTGTVKE VDAKEAVILL ADDITGTLKA
SEISRDKVED ARNVLKEGDE VEAKITNVDR KNRAIILSVK AKDVADEKAA IKEHSTKAAE
AAQPATIGDL IKAEMENKNS
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