Gene Sde_2083 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2083 
Symbol 
ID3967467 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand- 
Start bp2666567 
End bp2667673 
Gene Length1107 bp 
Protein Length368 aa 
Translation table11 
GC content48% 
IMG OID637921173 
Productaspartate-semialdehyde dehydrogenase 
Protein accessionYP_527555 
Protein GI90021728 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0136] Aspartate-semialdehyde dehydrogenase 
TIGRFAM ID[TIGR01745] aspartate-semialdehyde dehydrogenase, gamma-proteobacterial 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.00236883 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGTTG GTTTTGTTGG ATGGCGTGGA ATGGTTGGCT CCGTGTTAAT GGGGCGTATG 
CTAGAAGAGA ATGATTTTGC TGGTATTGAG CCAATATTTT TTACCACCTC TAATGTTGGT 
GGTGCTGCGC CAGACGTGGG TGTAGATGTG CCACCACTAA AAGATGCGCA TGATATCAAC 
GAGTTAAAAG CGCTGGACGC GATTATCTCT TGTCAGGGCG GCGACTACAC CAAGAAAGTG 
TTTGGTGATT TGCGCGGTGC GGGCTGGGAT GGCTACTGGA TAGATGCGGC TTCTTCATTG 
CGCATGAAAG ATGACGCTTT AATCATTTTA GACCCAGTAA ACGACGGTGT GATTCGCGAT 
GGATTGGCGC GTGGCGTTAA AAACTTTATT GGCGGTAACT GCACAGTAAG CTTGATGCTT 
ATGGGCTTAG GTGGCTTGTT TAAAGAAGGC TTGGTTGATT GGGTAAGTGC AATGACATAC 
CAAGCGGCCA GTGGTGCCGG TGCGCAAAAT ATGCGCGAAC TAATCACGCA AATGGGTGAA 
ATTAAGGCTG CAGTGGCCGA CGACTTGGCT AACCCAGCGT CTGCTATTTT AGATATCGAT 
CGCAAAGTTG CAGAAACAAT GCGAACAGGT CTAACTACCG ATAACTTTGG TGCGCCATTG 
GCGGGTAGCT TGTTGCCGTA TATCGATACT CAACTTGAAA ACTTCCAAAG TCGTGAAGAG 
TGGAAGGCCG AGGCGGAGAC CAATAAAATA TTAGGGCGCT CTGCTAACCC CATTGCGATA 
GATGGCATTT GTGTGCGTAT TGGTGCAATG CGCTGTCACA GTCAGGCGTT GACTATCAAG 
TTGAACAAAG ATGTGCCAAT GGCGGACATC GAATCAATTA TTGCCAATGC TAACGATTGG 
GTGAAGGTTG TACCGAACAA TCGCGCAGAA ACACTTAGCG ATTTAACGCC AACCAAAGTA 
ACTGGTACGC TTTCTGTGCC AGTAGGTCGT TTGCGTAAAA TGTCTATGGG ACCTCAATAC 
CTTACGGCAT TTACAGTGGG TGACCAGTTG CTGTGGGGCG CTGCAGAGCC ATTGCGCAGA 
ATGTTGAGAA TCTTGCGCGA AGCGTAA
 
Protein sequence
MKVGFVGWRG MVGSVLMGRM LEENDFAGIE PIFFTTSNVG GAAPDVGVDV PPLKDAHDIN 
ELKALDAIIS CQGGDYTKKV FGDLRGAGWD GYWIDAASSL RMKDDALIIL DPVNDGVIRD 
GLARGVKNFI GGNCTVSLML MGLGGLFKEG LVDWVSAMTY QAASGAGAQN MRELITQMGE 
IKAAVADDLA NPASAILDID RKVAETMRTG LTTDNFGAPL AGSLLPYIDT QLENFQSREE 
WKAEAETNKI LGRSANPIAI DGICVRIGAM RCHSQALTIK LNKDVPMADI ESIIANANDW 
VKVVPNNRAE TLSDLTPTKV TGTLSVPVGR LRKMSMGPQY LTAFTVGDQL LWGAAEPLRR 
MLRILREA