Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2078 |
Symbol | |
ID | 3967462 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 2658314 |
End bp | 2659126 |
Gene Length | 813 bp |
Protein Length | 270 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637921168 |
Product | tryptophan synthase, alpha chain |
Protein accession | YP_527550 |
Protein GI | 90021723 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0159] Tryptophan synthase alpha chain |
TIGRFAM ID | [TIGR00262] tryptophan synthase, alpha subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGAATCGTT TAAAGAAAAC TTTGTCAGAT TTGAAAGCTG CGCAAAAGAA GGCGTTGGTA ACATATTTTG TAAATGGTGA CCCACGGCCG AGCGTTAGTT TAAAGGCTAT GCACGCACTT GTTGAAGGTG GTGCGGATAT TATTGAGGTC GGTGTACCTT TTTCCGACCC TATGGCCGAA GGACCAGTGA TTCAGCGCGG ACACGAACGT GCGCTAGAGC ACAATGTAAG CTTAAAAGGC ACCTTGGCGC TTGTTAAAGA ATTTCGCAAA GCCAACAGCG ATACGCCCGT GGTGCTAATG GGCTACGCAA ACCCTGTAGA GCGTATGGGC TATGAATTGT TTGCTGCGCA AGCTAAGGCC GCGGGTGTAG ACGGCTTGCT AACAGTTGAT TTGCCGCCAG AAGAAGCCGT TGAGTTAAAT AAAGAGTTGG TTGCAAACGG CCTAGAAAGT ATTTTCCTGT TGGCGCCAAC AACTACCGAA GAAAGAATGA AAAAAGTCGT TGGTTTGGCC AGCGGCTTCT TGTACTACGT TTCATTAAAA GGTGTAACCG GAGCAGGGCA CCTAGACGTA AATGCAGTAA AAGAGCGTGT TGAAAAAATT TCATCTTTAA CTGACCTGCC TGTTCTTGTT GGGTTTGGTA TTAAAGACCC TGAATCTGCA AAAAGCATTG GAGCGAATGC TGATGGCGTT GTAGTTGGTA GCGTGCTCGT AGACGCTATG GGCAATGCTG CTAGTGAAAG CGACGAGGTT ATTTGCGAAA AAATTATTAA TATTGTGGCG CCAATTAGAG CCGGCTTAGA CTCATTGGCT TAA
|
Protein sequence | MNRLKKTLSD LKAAQKKALV TYFVNGDPRP SVSLKAMHAL VEGGADIIEV GVPFSDPMAE GPVIQRGHER ALEHNVSLKG TLALVKEFRK ANSDTPVVLM GYANPVERMG YELFAAQAKA AGVDGLLTVD LPPEEAVELN KELVANGLES IFLLAPTTTE ERMKKVVGLA SGFLYYVSLK GVTGAGHLDV NAVKERVEKI SSLTDLPVLV GFGIKDPESA KSIGANADGV VVGSVLVDAM GNAASESDEV ICEKIINIVA PIRAGLDSLA
|
| |