| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2065 |
|---|
| Symbol | |
|---|
| ID | 3967449 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 2643236 |
|---|
| End bp | 2644531 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637921155 |
|---|
| Product | ammonium transporter |
|---|
| Protein accession | YP_527537 |
|---|
| Protein GI | 90021710 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0004] Ammonia permease |
|---|
| TIGRFAM ID | [TIGR00836] ammonium transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000000790161 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.636143 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCCC TTCTTCGCAC GTTGCCATTG GCAGCACTGC TATTGCCAAG TATTGCCTTA
GCAGATGACT TAAATGGTGC AAACACCGCA TGGATACTTA CCGCTACTGC TTTAGTACTC
TTTATGACGT TGCCCGGCCT GTCGCTTTTT TACGGCGGTT TGGTGCGCAC AAAAAATGTA
CTAAGTGTGC TTATGCAATG CTTCGCCATT GCGTGTATCG CATCGTTAAT TTGGTTTGCA
TTCGGCTATA GCCTCGCTTT CTCTGAAGGC AATATGATTA TTGGAGACCT AAGCAAAGCC
TTTTTTAATG GCATGGGTAA AAATTCAATG TCTGGCGATA TACCCGAGCC ACTCTTTGCT
ATGTTTCAAA TGACCTTTGT GATTATCACC CCTGCGTTAA TTGTGGGTGC ATTTGCAGAG
CGTATGAAGT TCTCTTCGGT GCTCATTTCT ACCGTTTTAT GGATACCTCT TGTTTACGCA
CCTGTTTGTC ATTGGGTGTG GGGCGGCGGT TGGTTAGCTA GCCAGTTTGG TGTACTCGAC
TTTGCCGGCG GTACTGTTGT GCATATTACT GCGGGTGTAG CTGCACTGGT AACTGCACTT
ATGATTGGCA ATCGTAATGG TTTTCCACAT ACGCCGATGC CCCCGCATAA CATGACAATG
ACCGTAACAG GCGCGGGTAT GTTGTGGGTA GGCTGGTTCG GTTTTAACGC TGGTAGTGCG
CTAAGCGCGG GTGGCGATGC CGCCATGGCA ATGCTGGTTA CGCACATATC TGCTGCTGCC
GGTTCGTTAG CATGGATGAC CATCGAATGG CTCAAGTTTG GTAAGCCAAG CGTGTTGGGT
ATTGTTACCG GTATGGTTGC AGGTTTAGGT ACTATTACAC CTGCGTCTGG GTTTGTTGGC
CCTGGTGGTG CGTTAGTCAT TGGTATAACC GCTGGTGTAG TGTGTTTTTA TGCCACCCAG
TTAATCAAAC GCAAACTAGT TATTGATGAC TCTCTTGACG TTTTCCCAGT GCACGGCGTT
GGCGGTATTT TGGGTACTAT GCTTGCCGGT GTATTTGCCT CTACAAGTAT TGGTGCTTTC
TCTGGCCACG GTTTCGCAGA TGGAATAGAA ACAATGGGTG CGCAGGTTTG GTCTCAGTTT
GTGGGTGTCA TTACTACTAT TGTGTTCACA GCGGTTATGA CCTACATCAT CATTAAAGTT
ACCGGTTGGA TTACAGGCGG TATACGTGTC GACAAAGATG AAGAGACCCA AGGGTTAGAC
TTAGTATTAC ACGACGAAGC AGGTTATAAA CTTTAA
|
|---|
| Protein sequence | MKPLLRTLPL AALLLPSIAL ADDLNGANTA WILTATALVL FMTLPGLSLF YGGLVRTKNV
LSVLMQCFAI ACIASLIWFA FGYSLAFSEG NMIIGDLSKA FFNGMGKNSM SGDIPEPLFA
MFQMTFVIIT PALIVGAFAE RMKFSSVLIS TVLWIPLVYA PVCHWVWGGG WLASQFGVLD
FAGGTVVHIT AGVAALVTAL MIGNRNGFPH TPMPPHNMTM TVTGAGMLWV GWFGFNAGSA
LSAGGDAAMA MLVTHISAAA GSLAWMTIEW LKFGKPSVLG IVTGMVAGLG TITPASGFVG
PGGALVIGIT AGVVCFYATQ LIKRKLVIDD SLDVFPVHGV GGILGTMLAG VFASTSIGAF
SGHGFADGIE TMGAQVWSQF VGVITTIVFT AVMTYIIIKV TGWITGGIRV DKDEETQGLD
LVLHDEAGYK L
|
|---|
| |