| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2061 |
|---|
| Symbol | |
|---|
| ID | 3967445 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 2639863 |
|---|
| End bp | 2640492 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637921151 |
|---|
| Product | MotA/TolQ/ExbB proton channel |
|---|
| Protein accession | YP_527533 |
|---|
| Protein GI | 90021706 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0811] Biopolymer transport proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.590103 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTTGCAA TCCTTGCTTC TGGCGGTTGG TTAATAATGG TGCCGCTTCT ACTGTGCTCC
GTAGCGGTTA TAGCTATTAG TATCGAGCGC TTTTGGACTC TAGACCCCTC TAAAATTGCA
CCGAAGCATC AGTTGGGGCA GGTGTGGAAT TGGTTGCAAA ACAATCAGTT GGATAGTGAA
AAACTTAAAG AGTTGCGTCA TTCCTCTCAA CTTGGTCGTA TATTAGCCGC AGGGTTAAGT
AACTCACGCC ACGGCCGCGA AGTAATGAAA GACAGTATCC AAGAAGCTGC CAATCAAGTT
GTGCACGAGC TAGAAAAGTT TTTGGGTGCC TTGGGCACTA TCGCAGCTAT CGCTCCGTTG
TTGGGTTTGT TGGGTACGGT AATTGGTATG ATTAAAGTGT TTACCGCGCT CAATTTAGAA
GGGGCAACTA ATGCCGCGCC ATTAGCTGGT GGTATTTCTG AAGCATTAGT AACCACCGCT
GTTGGTTTGT TTGTTGCGAT ACCTGCGATG ATGGCTCATA GGTTCTTCGT GCGTCGCGTA
GAAGCATTAG TGGTTACCCT TGAGCAAGAA GCGATTAAGT TAGTGGATGC CCTCCATAAT
GATCGCCGCG TAGATATGAA AGCAGCATAA
|
|---|
| Protein sequence | MFAILASGGW LIMVPLLLCS VAVIAISIER FWTLDPSKIA PKHQLGQVWN WLQNNQLDSE
KLKELRHSSQ LGRILAAGLS NSRHGREVMK DSIQEAANQV VHELEKFLGA LGTIAAIAPL
LGLLGTVIGM IKVFTALNLE GATNAAPLAG GISEALVTTA VGLFVAIPAM MAHRFFVRRV
EALVVTLEQE AIKLVDALHN DRRVDMKAA
|
|---|
| |