| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2027 |
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| Symbol | |
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| ID | 3967290 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 2553958 |
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| End bp | 2555625 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637921115 |
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| Product | periplasmic oligopeptide-binding protein precursor |
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| Protein accession | YP_527499 |
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| Protein GI | 90021672 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.197641 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAAACC GTAAAAGCTT TGCTCGTAAA ATTAATACAC TAGCATTTTC TCTTACTGTT
GCTTTCGCAG CGCTTTTAGT TGGTTGCAGC TCCGATAAAA GCACCAGCCA AGACCCAGAG
CAAACTCTGC ATATGGCCTT CGGCGCCGAG CCGCAAACGC TCGACCCTCA TATGGCCGCA
GGCGTACCAG ATCTAAGACT GCTAGCAGCT ATAATAGAAC CCCTAGCAGA GCTAGACCCA
CACACCTTCG AAGCGGTGCC AGCACTTGCT AAAAGCTGGG ATATATCTGA AGACGGTTTG
GTTTATACGT TTCACCTGCG CGAAAATGCA AAATGGTCCG ACGGTACACC TTTAACAGCG
CAAGATTTTG TATTTAGCTG GCAGCGCATA CTTTCACCGG CTATTGGTGG TTATTACGTA
CAAGACTATT ACAACATAGT CGGCGCCGAA GATTTTAATA CAGGTAAAAG CGAAGATTTC
ACCAGTGTGG GCGTAAAAGC CATAAGCAAC CACGCCCTGC AATTTACTTT GCTAAAACCA
GACCCTCTGT TTGTCAAACG CATGGCACAT GAAACAGTAG GCCCGGTGCA ACCGGCAACT
ATTTTAAAGT TTGGTAACAT AGACGACGCC ACCTCAAAGT GGACCCAGCC CCCTAACTAT
GTTTCTAACG GCCCATTTGT TATGACCCGC TGGGAAATTA ACAAAGTGAT AGTGCTAGAG
AAAAACCCCC ACTACTGGGA TGCCGAAAAC GTAAAACTAG AAAAAATTTA CGCCTATCCC
ATTGAAGATA TAGCCACAGA AGAGCGCATG TTTCGTTCCG GTCAAATTCA TGTAGCGTGG
GGCGGCCACA TACCTACCGA AAAAATTGAA ACTTATCAAA AAGAATCGCC AGAAAAAATC
ATCATTACTC CAATGTACGG CACTTATTTT TATATTTTTA ATAATCAAGT CGCCCCATTT
GATAATGCCG ATGTTCGCAG AGCTTTCACC TATGCGCTAG ACCGTGAAAT GCTAACCTCT
AAAATTGCAA AAGGCGGTAA GCAACCTGCT ACCACGCTCA GTTTGCCTGT ACCGCACTTC
AACCCCGACT CGCCCATTGA GTATAACCCA CAAAAAGCAG CGGAATATCT TGCTAAAGCG
GGTTACCCCA ATGGTGAAGG CTTTCCGCAA ATTGCGCTGC TGTATAACAC CGACGAATTA
CATAAAAAAA TAGCCGTTGC CGCGCAGCAA ATGTGGAAAA AACACTTAAA CGTAAACATA
ACGCTTGAAA ACCAAGAGTG GAAATTCTTT TTAGAAAACA GAAAGAATAA AACATTCACA
TTGGCGCGCG GTGGTTCTAT TAGCACCTTT GCGGACCCAA TTGATTTTCT GCAATCCTAC
ATGACCGGTC ACGGCATGAA TGATTCAGAC TATAGAAATT CAGATTTTGA CGCGCTGGTT
AAAAAAGCAC TTTACGAACT AGACCCGGTA AAACGCGGGG CTTATTTGGA AGAAGCAGAA
GAGCTTTTGC TCAATGAGGC TGCGATAGCG CCGGTATTAA CCTATACGGA AGTTTTCTTG
AAAGCGCCCG AGGTTAAAAA CGCCATTTTC AGCGCAACTG CAAGACCAAA CTATAAGGAT
ATTTATCTCG ACTTTTCGAC AGCAGCGCAA CAACCACAAA GCGAGTAA
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| Protein sequence | MLNRKSFARK INTLAFSLTV AFAALLVGCS SDKSTSQDPE QTLHMAFGAE PQTLDPHMAA
GVPDLRLLAA IIEPLAELDP HTFEAVPALA KSWDISEDGL VYTFHLRENA KWSDGTPLTA
QDFVFSWQRI LSPAIGGYYV QDYYNIVGAE DFNTGKSEDF TSVGVKAISN HALQFTLLKP
DPLFVKRMAH ETVGPVQPAT ILKFGNIDDA TSKWTQPPNY VSNGPFVMTR WEINKVIVLE
KNPHYWDAEN VKLEKIYAYP IEDIATEERM FRSGQIHVAW GGHIPTEKIE TYQKESPEKI
IITPMYGTYF YIFNNQVAPF DNADVRRAFT YALDREMLTS KIAKGGKQPA TTLSLPVPHF
NPDSPIEYNP QKAAEYLAKA GYPNGEGFPQ IALLYNTDEL HKKIAVAAQQ MWKKHLNVNI
TLENQEWKFF LENRKNKTFT LARGGSISTF ADPIDFLQSY MTGHGMNDSD YRNSDFDALV
KKALYELDPV KRGAYLEEAE ELLLNEAAIA PVLTYTEVFL KAPEVKNAIF SATARPNYKD
IYLDFSTAAQ QPQSE
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