Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2024 |
Symbol | |
ID | 3967287 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 2548465 |
End bp | 2550096 |
Gene Length | 1632 bp |
Protein Length | 543 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637921112 |
Product | low molecular weight phosphotyrosine protein phosphatase |
Protein accession | YP_527496 |
Protein GI | 90021669 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1388] FOG: LysM repeat |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000000444434 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCAAATTA CGTTATTTTC TCGCACTTTT GCGCGAACCA CTCCGCTAGT CGCACTATTA GGTGTATTAA TTGGCTTTCA AGGATGCGCT TATACTAAAA ACGAAGCCGA ATCTGAGCTT GTTATCGTAT CAACTCCAGA AGAGCAGCTA GAAGCTGATA TTGCTGAGCA CTCGCTCGAT GCTGAACCAT TAGACGTCCC CGAAGCCGAC GAGCCAATTG TAGAGTCAGA ATTTACCCTT TGGGATCGAA TCCGAGCTGG CTACCAACTA GAAATCCCCC AAGACAAAAG AATCGACCAA GAACGTAATT GGTATGGCAA ACACCAAAGC TACCTAGATA GAGTCACCGA TCGCGGTGAG CGTTACCTCT ACTATATTGT TGGCGAATTA GAACGCCGCA ACATGCCTAC GGAATTTGCT TTGCTTCCTA TAGTAGAAAG CGCATTTGAC CCCTTTGCCT ATTCCCATGT AACGGCTTCT GGCATGTGGC AGTTTATGCC CCGCACAGGG CGAAGCTTGG GCTTAAAGCA AAACTGGTGG TATGACGGTC GCAGAGACGT GGTTTTATCT ACCAATGCAG CGCTCACCTA CCTAGAAAAA CTACATAAGC ATTTTGATGG CGACTGGCTG CTGGCAATGG CAGCGTATAA TAGCGGTATT GGTAATGTTT CTCGGGCAAT TAAACGCAAT GAAAAAGCCG GTAAACCCAC CGATTTTTGG AACCTAAAAC TCCCCAGAGA AACTCAAGCA TACGTACCTC GGCTACTGGC TATTAGCCAG CTAATTGGCG CACCAGAAGA TTACGGCTTA ACACTGCGCC CAATTCCCAA CCAACCGTAT TTCGAAGCCG TTGAAGTGGG GTCGCAAATA GATTTGGCTC AAGCGGCAGA GCTTGCCGAA ATAGATATGG ATGAGCTATA TCAACTTAAT CCTGCCTTTA ATCGCTGGGC GACAGACCCT ACCGGCCCGC ACACTTTATT GGTGCCTTAC GCCTCAGCGA ACTCATTCAA AGAAAAGCTA GCCGGCATTC CGCCTGGCAA ACGAATCACA TGGGATAGAT ACACTATCGC GTCCGGTGAT TCCCTCTCTA CTATCGCTGC AAAATACAAA GTAAGCGTAG ATTCACTAAA AAGCATAAAT GGTTTGCGAA ATAACAACAT TCGCGCGGGA AAGACTCTAT TGGTGCCTAT TGCTGCTAAA AAAGACGAGC ACTACACACA AAGCATTGTG CAACGCATCC AAAACAGACA ATCCTCAGGC GGTAAAAGCG GCAACTCAAC CAAAGTTGAG CATATAGTAC AAAGCGGCGA CAGCTTCTGG TCTATTGGTA AAAAATACGG TGTTACCCCA AGCAAAGTTG CACATTGGAA CAACCTTGCC CCAGCGGACC TTATCAAACC GGGCCAAACT CTCGTTATTT GGACCAAGGC CGAAGCTAGC ACTGCGTCCA ACAACGCTGT TGTTAGAAAG CTCTCGTACA AGGTAAGGCG CGGAGATTCC CTGCATCGTA TAGCTGACAA ATTCAAAATA AACGTGAGCG ACATATTGCA GTGGAATCAA GTCGACACCA AGAGCTATTT ACAGCCAGGT GATACGCTAA CACTTTTTGT GGATGTGACT AAAACTAACT AG
|
Protein sequence | MQITLFSRTF ARTTPLVALL GVLIGFQGCA YTKNEAESEL VIVSTPEEQL EADIAEHSLD AEPLDVPEAD EPIVESEFTL WDRIRAGYQL EIPQDKRIDQ ERNWYGKHQS YLDRVTDRGE RYLYYIVGEL ERRNMPTEFA LLPIVESAFD PFAYSHVTAS GMWQFMPRTG RSLGLKQNWW YDGRRDVVLS TNAALTYLEK LHKHFDGDWL LAMAAYNSGI GNVSRAIKRN EKAGKPTDFW NLKLPRETQA YVPRLLAISQ LIGAPEDYGL TLRPIPNQPY FEAVEVGSQI DLAQAAELAE IDMDELYQLN PAFNRWATDP TGPHTLLVPY ASANSFKEKL AGIPPGKRIT WDRYTIASGD SLSTIAAKYK VSVDSLKSIN GLRNNNIRAG KTLLVPIAAK KDEHYTQSIV QRIQNRQSSG GKSGNSTKVE HIVQSGDSFW SIGKKYGVTP SKVAHWNNLA PADLIKPGQT LVIWTKAEAS TASNNAVVRK LSYKVRRGDS LHRIADKFKI NVSDILQWNQ VDTKSYLQPG DTLTLFVDVT KTN
|
| |