Gene Sde_2021 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2021 
Symbol 
ID3967284 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp2545625 
End bp2546341 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content49% 
IMG OID637921109 
ProductDNA polymerase III, epsilon subunit 
Protein accessionYP_527493 
Protein GI90021666 
COG category[L] Replication, recombination and repair 
COG ID[COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 
TIGRFAM ID[TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family
[TIGR01406] DNA polymerase III, epsilon subunit, Proteobacterial 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACAGA TAGTTCTCGA TACCGAGACA ACGGGCCTAG AGCCAAGCCA AGGCCACCGA 
ATTATTGAGA TAGGGTGTGT TGAGCTAATA AATCGAAAGC TTACGGGCCG TCATTATCAC
CAGTACATTA AACCTGAACG GGAAATTGAT GAAGGCGCAA TTGAAGTTCA CGGCATTACC
AACGAATTTC TAGCAGACAA ACCGGTTTTT AAAGATATAG CCGATGAGTT TATGGCGTTT
GTTGATGGTG CAGAACTAGT CATTCACAAC GCACCGTTCG ATGTGGGCTT TCTAAATCAC
GAATTTAACC TTCTAGGGCG TGGCAGCACA GTTATAAACG ACCGCTGTTC TATTCTCGAT
ACGCTCGCAC TAGCAAGAAA CAAGCACCCT GGGCAAAAGA ACAACCTGGA TGCCCTGTGT
AAGCGTTACG GCGCAGATAA CTCCGCACGA GACCTTCACG GCGCTTTGCT CGATGCTGAA
ATTCTAGCCG ATGTTTACCT GTTAATGACC GGTGGGCAAA CCAACCTTGC CCTAGGTGGT
GCGGGTTCGT CTAGTGGCAT GGACGACGGT GGTGAAGAGC TTGTACGTGT AAGTGCCGAT
CGCAAACCGC TCCCCATTAT AAGAGCGTCT GCAGAAGAGC TGGCTTTACA CGAGAAAAAG
TTGGCTGAAA TAGACAAGGC TTCAGGCGGC GAATGCCTCT GGCTCAAGCA GTCATAA
 
Protein sequence
MRQIVLDTET TGLEPSQGHR IIEIGCVELI NRKLTGRHYH QYIKPEREID EGAIEVHGIT 
NEFLADKPVF KDIADEFMAF VDGAELVIHN APFDVGFLNH EFNLLGRGST VINDRCSILD
TLALARNKHP GQKNNLDALC KRYGADNSAR DLHGALLDAE ILADVYLLMT GGQTNLALGG
AGSSSGMDDG GEELVRVSAD RKPLPIIRAS AEELALHEKK LAEIDKASGG ECLWLKQS