Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2021 |
Symbol | |
ID | 3967284 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 2545625 |
End bp | 2546341 |
Gene Length | 717 bp |
Protein Length | 238 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637921109 |
Product | DNA polymerase III, epsilon subunit |
Protein accession | YP_527493 |
Protein GI | 90021666 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases |
TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family [TIGR01406] DNA polymerase III, epsilon subunit, Proteobacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGACAGA TAGTTCTCGA TACCGAGACA ACGGGCCTAG AGCCAAGCCA AGGCCACCGA ATTATTGAGA TAGGGTGTGT TGAGCTAATA AATCGAAAGC TTACGGGCCG TCATTATCAC CAGTACATTA AACCTGAACG GGAAATTGAT GAAGGCGCAA TTGAAGTTCA CGGCATTACC AACGAATTTC TAGCAGACAA ACCGGTTTTT AAAGATATAG CCGATGAGTT TATGGCGTTT GTTGATGGTG CAGAACTAGT CATTCACAAC GCACCGTTCG ATGTGGGCTT TCTAAATCAC GAATTTAACC TTCTAGGGCG TGGCAGCACA GTTATAAACG ACCGCTGTTC TATTCTCGAT ACGCTCGCAC TAGCAAGAAA CAAGCACCCT GGGCAAAAGA ACAACCTGGA TGCCCTGTGT AAGCGTTACG GCGCAGATAA CTCCGCACGA GACCTTCACG GCGCTTTGCT CGATGCTGAA ATTCTAGCCG ATGTTTACCT GTTAATGACC GGTGGGCAAA CCAACCTTGC CCTAGGTGGT GCGGGTTCGT CTAGTGGCAT GGACGACGGT GGTGAAGAGC TTGTACGTGT AAGTGCCGAT CGCAAACCGC TCCCCATTAT AAGAGCGTCT GCAGAAGAGC TGGCTTTACA CGAGAAAAAG TTGGCTGAAA TAGACAAGGC TTCAGGCGGC GAATGCCTCT GGCTCAAGCA GTCATAA
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Protein sequence | MRQIVLDTET TGLEPSQGHR IIEIGCVELI NRKLTGRHYH QYIKPEREID EGAIEVHGIT NEFLADKPVF KDIADEFMAF VDGAELVIHN APFDVGFLNH EFNLLGRGST VINDRCSILD TLALARNKHP GQKNNLDALC KRYGADNSAR DLHGALLDAE ILADVYLLMT GGQTNLALGG AGSSSGMDDG GEELVRVSAD RKPLPIIRAS AEELALHEKK LAEIDKASGG ECLWLKQS
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