Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2016 |
Symbol | |
ID | 3967259 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 2539292 |
End bp | 2540389 |
Gene Length | 1098 bp |
Protein Length | 365 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637921104 |
Product | putative periplasmic protease |
Protein accession | YP_527488 |
Protein GI | 90021661 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.000000438973 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGGAATTTT TGAGTGAGTA TGGGCTTTTT TTAGCCAAGA CAGTAACTTT TGTAATAGCT TTTGCCGCAA TAGTGGTGGT TATAGTATCC GCTGGCAGCA AAGGGCAAGG GGCCGGCAAA GGCCTTATTG AAATAACTAA ACTAAACGAA AAATACGACG ATATTCTACA TCTTGTTAAA TCTGCCGTTA TAGATGAAGA GTCGCTTAAG GTAGAGCGCA AGCAAGAAAA GAAAGCAGAG AAAGAAAAAA AGAAAGCGTT AAAAGCACAG GCTAAACAAA AAAAGCAATC TGTTAGCTCC GAAAATACAG ATGTCGCTGA AGCAGATTCT AATACAGAAG CAAAGCCTCG GGTGTTTGTA ACCCATTTTG ACGGCGATAT TAAAGCATCA GAAACGCAAG AGTTGCGTGA AGTAATTACC GCTATTTTGT CTATCGCCAA GCCGAGCGAT GAAGTGGTAG TTTGCCTTGA GAGCCCTGGG GGAATGGTGC ATGGCTACGG TTTGGCAGCC AGCCAGCTTG CGCGCATCAC CGAGAAAAAC ATCCCATTAA CAGTATGCGT AGATAAGGTG GCCGCGAGCG GCGGCTACAT GATGGCATGC GTAGCGAATA AAATAGTGGC TGCACCATTT GCGGTAATTG GTTCTATAGG TGTTGTTGCT CAAATACCTA ATTTTCACAG ATTGCTTAAA AAGCATGATG TGGATTACGA AATGCTCACC GCCGGTGAAT ACAAGCGCAC TTTGACTATG TTTGGTGAGA ATACTGAAAA AGGGCGCCAA AAATTTGTAG AAGACCTAGA AGAAACACAC GATTTGTTTA AAGACTTTAT TCGACAGCAT CGTAGTGTGG TTGATGTAGA TAAGGTTGCA ACGGGTGAAA TTTGGTTTGG CACTAAAGCC CTAGAAGAAA AGCTAATTGA TGCTGTGCAA ACTTCTGATG CATATTTGTT TGATAGGAAA GATAGTGCAG ACCTTTTCGA GATTAACTAC GTGCATAAGC GTACAGTGAT GGAGAAATTA GGTATTAATG CTGAGGCGAG TCTGGAGCGT GTGATAGGCA AGCTGTGGCA AAAGGCTACC ACTAGGTATA CCGCATAA
|
Protein sequence | MEFLSEYGLF LAKTVTFVIA FAAIVVVIVS AGSKGQGAGK GLIEITKLNE KYDDILHLVK SAVIDEESLK VERKQEKKAE KEKKKALKAQ AKQKKQSVSS ENTDVAEADS NTEAKPRVFV THFDGDIKAS ETQELREVIT AILSIAKPSD EVVVCLESPG GMVHGYGLAA SQLARITEKN IPLTVCVDKV AASGGYMMAC VANKIVAAPF AVIGSIGVVA QIPNFHRLLK KHDVDYEMLT AGEYKRTLTM FGENTEKGRQ KFVEDLEETH DLFKDFIRQH RSVVDVDKVA TGEIWFGTKA LEEKLIDAVQ TSDAYLFDRK DSADLFEINY VHKRTVMEKL GINAEASLER VIGKLWQKAT TRYTA
|
| |