Gene Sde_2016 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2016 
Symbol 
ID3967259 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp2539292 
End bp2540389 
Gene Length1098 bp 
Protein Length365 aa 
Translation table11 
GC content43% 
IMG OID637921104 
Productputative periplasmic protease 
Protein accessionYP_527488 
Protein GI90021661 
COG category[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0616] Periplasmic serine proteases (ClpP class) 
TIGRFAM ID[TIGR00706] signal peptide peptidase SppA, 36K type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000438973 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGAATTTT TGAGTGAGTA TGGGCTTTTT TTAGCCAAGA CAGTAACTTT TGTAATAGCT 
TTTGCCGCAA TAGTGGTGGT TATAGTATCC GCTGGCAGCA AAGGGCAAGG GGCCGGCAAA
GGCCTTATTG AAATAACTAA ACTAAACGAA AAATACGACG ATATTCTACA TCTTGTTAAA
TCTGCCGTTA TAGATGAAGA GTCGCTTAAG GTAGAGCGCA AGCAAGAAAA GAAAGCAGAG
AAAGAAAAAA AGAAAGCGTT AAAAGCACAG GCTAAACAAA AAAAGCAATC TGTTAGCTCC
GAAAATACAG ATGTCGCTGA AGCAGATTCT AATACAGAAG CAAAGCCTCG GGTGTTTGTA
ACCCATTTTG ACGGCGATAT TAAAGCATCA GAAACGCAAG AGTTGCGTGA AGTAATTACC
GCTATTTTGT CTATCGCCAA GCCGAGCGAT GAAGTGGTAG TTTGCCTTGA GAGCCCTGGG
GGAATGGTGC ATGGCTACGG TTTGGCAGCC AGCCAGCTTG CGCGCATCAC CGAGAAAAAC
ATCCCATTAA CAGTATGCGT AGATAAGGTG GCCGCGAGCG GCGGCTACAT GATGGCATGC
GTAGCGAATA AAATAGTGGC TGCACCATTT GCGGTAATTG GTTCTATAGG TGTTGTTGCT
CAAATACCTA ATTTTCACAG ATTGCTTAAA AAGCATGATG TGGATTACGA AATGCTCACC
GCCGGTGAAT ACAAGCGCAC TTTGACTATG TTTGGTGAGA ATACTGAAAA AGGGCGCCAA
AAATTTGTAG AAGACCTAGA AGAAACACAC GATTTGTTTA AAGACTTTAT TCGACAGCAT
CGTAGTGTGG TTGATGTAGA TAAGGTTGCA ACGGGTGAAA TTTGGTTTGG CACTAAAGCC
CTAGAAGAAA AGCTAATTGA TGCTGTGCAA ACTTCTGATG CATATTTGTT TGATAGGAAA
GATAGTGCAG ACCTTTTCGA GATTAACTAC GTGCATAAGC GTACAGTGAT GGAGAAATTA
GGTATTAATG CTGAGGCGAG TCTGGAGCGT GTGATAGGCA AGCTGTGGCA AAAGGCTACC
ACTAGGTATA CCGCATAA
 
Protein sequence
MEFLSEYGLF LAKTVTFVIA FAAIVVVIVS AGSKGQGAGK GLIEITKLNE KYDDILHLVK 
SAVIDEESLK VERKQEKKAE KEKKKALKAQ AKQKKQSVSS ENTDVAEADS NTEAKPRVFV
THFDGDIKAS ETQELREVIT AILSIAKPSD EVVVCLESPG GMVHGYGLAA SQLARITEKN
IPLTVCVDKV AASGGYMMAC VANKIVAAPF AVIGSIGVVA QIPNFHRLLK KHDVDYEMLT
AGEYKRTLTM FGENTEKGRQ KFVEDLEETH DLFKDFIRQH RSVVDVDKVA TGEIWFGTKA
LEEKLIDAVQ TSDAYLFDRK DSADLFEINY VHKRTVMEKL GINAEASLER VIGKLWQKAT
TRYTA