Gene Sde_2010 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2010 
SymbolmetH 
ID3967253 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp2530548 
End bp2534249 
Gene Length3702 bp 
Protein Length1233 aa 
Translation table11 
GC content47% 
IMG OID637921098 
ProductB12-dependent methionine synthase 
Protein accessionYP_527482 
Protein GI90021655 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain 
TIGRFAM ID[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCCCC AGCTAAAGCA ACGTATCGAC TCCCTTTATG CCGCCCTCGA AGAGCGCATC 
CTAATTTTAG ATGGCGCAAT GGGCACCATG ATACAGAGCT ACAAACTGCA AGAAGCGGAT
TATCGCGGCG AGCGATTTGC AAACCATCAC CAGGATTTAG GCGGTAATAA CGACCTGCTC
GCCCTCACCC AGCCGGTTAT TCTTAGAGAT ATTCACCGCG CTTACTTAGA TGCGGGTGCA
GATATACTCG AAACCAATAC CTTTAACTCC ACACAAATAT CGCAGGCCGA TTACGATACT
CAAGAAATAG CCTACGAGTT AAACAAAGAA TCTGCAGCTA TCGCTCGCGC CGTAGCCGAT
GAAGTAACCC TAGAAACCCC CAATAAGCCA CGCTTTGTTG CAGGCGTTTT AGGGCCAACC
AGCCGCACTT GTTCCATATC GCCAGATGTT AACGACCCCG GCGCTCGCAA TGTGACCTAC
GATGAGCTGG TAACCAACTA TAAAGAAGCC ACCCTAGGAC TTATTGAGGG CGGCGCCGAC
ATTATTTTAA TCGAAACTAT TTTCGATACG CTCAATGCGA AAGCCGCGGT TTTTGCCGTG
AAAACTGTAT TTGAAGACAT TGGCTATGAA CTGCCAATAA TGATCTCAGG CACGATTACT
GATGCATCGG GCCGCACCTT ATCTGGCCAA ACAACAGAGG CGTTTTACAA CTCCCTTGCT
CACGCTAAAC CTTTATCTAT AGGCTTAAAC TGTGCATTAG GTGCAGCAGA ATTAGAGCCT
TACGTGCGAG AGCTTTCGCG TGTTTCGAAC TGTTATGTTT CAGCTCACCC CAACGCGGGC
CTACCTAACG AGTTTGGCGA ATACGATCAA AGCGCCAAAG AAATGGCCGA TGTAGTAGAA
AAATTTGCAG TTAAAAACTA CGTCAATATT ATCGGTGGCT GCTGCGGTAC CACGCCGCAA
CATATTAAAG CTATCGCCGA GACTGTAAGC AAATACCCTG CTCGCAAAAT TCCAGATATC
GAGCCCCAAT GCAGGCTCGC AGGCCTCGAG CCTTTTAATA TCTCTAAAGA CTCCCTTTTT
GTAAACGTGG GCGAGCGCTG TAACATTACC GGCTCGGCCC GCTTTAAACG CCTTATATTA
GAAGGCGATT ACACCACTGC CATTGAGGTC GCTCTACAGC AAGTTACCGA CGGTGCCCAG
ATAATTGATA TCAACATGGA CGAAGGCATG CTAGATGCCG AAGCGGCCAT GATTAAGTTC
TTAAACCTGC TTGCAGGTGA ACCCGATATT GCACGTGTTC CAATTATGGT GGATTCCTCC
AAGTGGGATG TAATTGTTGC CGGTTTAAAA TGCATTCAAG GTAAACCCAT TGTTAACTCC
ATTAGCCTTA AAGAAGGTGA AGCGGAGTTT ATTGAGCGCG CCCGTCTCTG CAAACTCTAC
GGTGCAGCGG TTATCGTTAT GGCGTTTGAC GAAGATGGTC AAGCAGACAC AGCGCAACGC
AAAATCGAAA TTTGTGAACG CTCGTATAAA GTACTTACCG AACAAGCTGG CTTTCCGCCC
GAAGACATTA TTTTCGACCC CAATATTTTT GCTGTAGCAA CAGGTATTGA AGAGCATAAC
AATTACGCCG TAGACTTTAT TGAAGCCACT CGCTGGATTC GACAAAACCT ACCTTATGCC
GGCGTATCGG GTGGTGTAAG TAACGTGTCT TTCTCATTCC GTGGCAACGA CCCCGTACGA
GAAGCCATTC ACTCTGTATT CCTTTACTAC GCAATTCAAG CGGGTATGAA TATGGGCATC
GTAAACGCCG GGCAGCTAGC TATTTACGAC GACCTACCCA AAGAACTAAA AGACTGTGTT
GAAGACGTTA TTCTTAACAA GAACGATAAC GGTACCGAAG CACTCTTAGA AATTGCAGAG
CAATACCGTG GCGATGGAAA AGCGCAGGCC AGCAAAGAAG ATTTGGCCTG GCGCGAATTA
CCCGTAGAAA AACGCTTAGA GCACTCGCTA GTAAAAGGGA TTTCTGCCTA TATTGAAGCC
GACACCGAAG AAGCGAGACA AAACGCGAGC AAGCCTATCG ATGTAATCGA AGGGCCATTA
ATGGCTGGCA TGAACGTTGT TGGCGACCTG TTTGGCTCCG GTAAAATGTT TTTACCGCAG
GTTGTTAAGT CTGCACGTGT AATGAAGCAG TCCGTTGCCT ACTTACAGCC GTTTATCGAA
GCCGAAAAAA CCGAAGGCGC TCGCAGCAAC GGTAAAATAC TAATGGCCAC CGTTAAAGGC
GACGTACACG ATATTGGTAA AAATATTGTT GGCGTAGTAT TGCAGTGTAA CAATTTTGAT
GTTGTTGATT TGGGCGTTAT GGTGCCGTGC GAGAAAATTA TCGACACAGC AATAGCAGAA
AACTGCGACA TGATTGGCCT ATCAGGCCTT ATTACACCAT CGCTAGATGA GATGGTGAAT
GTCGCGCGCG AAATGCAATC TCGCCAAGTA AACTTACCTC TGCTTATAGG TGGAGCCACT
ACGTCTAAAG CACACACCGC AGTTAAAATT GACCCTCAAT TTTCGCTAAA CCAAGCCGTG
TATGTTGCGG ATGCTTCGCG TGCAGTTGGT GTCGCCTCCA AGCTTCTATC CTTAGATCAA
CGCGGGCCTT TTATTGCGTC CATAAAAGAA GAGTACGAAG CCGTTCGCGA GCGCCGAGCA
AATAGAACAA GCAACAAGCA GCTTGCTACT TACGCCGACG CAGTCAACAA AAAGCTACAG
CTAGATTGGA ATAAATTTAC CCCGGCGGTA CCCGCTTTTA CCGGAACTAA GGTTTTCGAA
AATTATCCGC TCGAAAAACT GGTTGAATAT ATAGATTGGA CACCATTCTT TATTAGCTGG
GACCTTGTAG GTAAATACCC GAAGATTTTT AAAGATGAAG TTATCGGCGA AGCAGCAACT
CAGCTATTTA AAGACGCACA AGAAATACTT AAAAAGCTCA TAGATGAAAA GCTTATTCAA
GCTAGCGCAA CTATAGGTTT TTGGCGTGCA AATACTATTG GTGACGACGA TATTAACGTT
ATGGACGACA ACGGCAAAAC ACTAGCCGAG TTACATCATA TTCGTCAGCA ACAAATTAAA
AATGGAGCCG ACGATGTGCT CATGTCTCTT GCGGACTTTG TAGCACCTCA AGATACCGGC
CTTAATGACT ACATTGGCGG CTTTGTTGTA ACCGCTGGCC ACGGGGTAGA TGAGCTAGCT
AAAGAGTACG AAGCAAAAGG TGATGACTAC AATGCAATCA TGGTAAAAGC GCTTGCAGAT
AGACTTGCAG AAGCTTTTGC AGAGCATTTG CATCAGCGCG TTCGCAAAGA GTTTTGGGGT
TACGACCAGG ACGAGAACCT CGCAAACGAA GATCTTATAC GAGAAAAATA TCAAGGCATT
CGCCCCGCAC CAGGCTACCC CGCATGCCCA GATCACACAG AAAAGCGCGC TTTGTTTGAC
TTACTGGATG CGGAAGCAAC TACAGGCGTT CAACTTACCG AGCACTACGC CATGTACCCT
ACCGCAGCAG TTTCTGGCTG GTACTTTGCT CACCCGAAGG CAAAGTATTT CAATACGGGC
AAAATAGCGA AGGACCAAGT TGAATCTCTA GCGTCGCGCA AAGGGTTAAG CACCGCAGAA
ATGGAAAAGT GGCTGCAGTC GGTACTTGAT TACGATATTT AA
 
Protein sequence
MNPQLKQRID SLYAALEERI LILDGAMGTM IQSYKLQEAD YRGERFANHH QDLGGNNDLL 
ALTQPVILRD IHRAYLDAGA DILETNTFNS TQISQADYDT QEIAYELNKE SAAIARAVAD
EVTLETPNKP RFVAGVLGPT SRTCSISPDV NDPGARNVTY DELVTNYKEA TLGLIEGGAD
IILIETIFDT LNAKAAVFAV KTVFEDIGYE LPIMISGTIT DASGRTLSGQ TTEAFYNSLA
HAKPLSIGLN CALGAAELEP YVRELSRVSN CYVSAHPNAG LPNEFGEYDQ SAKEMADVVE
KFAVKNYVNI IGGCCGTTPQ HIKAIAETVS KYPARKIPDI EPQCRLAGLE PFNISKDSLF
VNVGERCNIT GSARFKRLIL EGDYTTAIEV ALQQVTDGAQ IIDINMDEGM LDAEAAMIKF
LNLLAGEPDI ARVPIMVDSS KWDVIVAGLK CIQGKPIVNS ISLKEGEAEF IERARLCKLY
GAAVIVMAFD EDGQADTAQR KIEICERSYK VLTEQAGFPP EDIIFDPNIF AVATGIEEHN
NYAVDFIEAT RWIRQNLPYA GVSGGVSNVS FSFRGNDPVR EAIHSVFLYY AIQAGMNMGI
VNAGQLAIYD DLPKELKDCV EDVILNKNDN GTEALLEIAE QYRGDGKAQA SKEDLAWREL
PVEKRLEHSL VKGISAYIEA DTEEARQNAS KPIDVIEGPL MAGMNVVGDL FGSGKMFLPQ
VVKSARVMKQ SVAYLQPFIE AEKTEGARSN GKILMATVKG DVHDIGKNIV GVVLQCNNFD
VVDLGVMVPC EKIIDTAIAE NCDMIGLSGL ITPSLDEMVN VAREMQSRQV NLPLLIGGAT
TSKAHTAVKI DPQFSLNQAV YVADASRAVG VASKLLSLDQ RGPFIASIKE EYEAVRERRA
NRTSNKQLAT YADAVNKKLQ LDWNKFTPAV PAFTGTKVFE NYPLEKLVEY IDWTPFFISW
DLVGKYPKIF KDEVIGEAAT QLFKDAQEIL KKLIDEKLIQ ASATIGFWRA NTIGDDDINV
MDDNGKTLAE LHHIRQQQIK NGADDVLMSL ADFVAPQDTG LNDYIGGFVV TAGHGVDELA
KEYEAKGDDY NAIMVKALAD RLAEAFAEHL HQRVRKEFWG YDQDENLANE DLIREKYQGI
RPAPGYPACP DHTEKRALFD LLDAEATTGV QLTEHYAMYP TAAVSGWYFA HPKAKYFNTG
KIAKDQVESL ASRKGLSTAE MEKWLQSVLD YDI