Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2010 |
Symbol | metH |
ID | 3967253 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 2530548 |
End bp | 2534249 |
Gene Length | 3702 bp |
Protein Length | 1233 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637921098 |
Product | B12-dependent methionine synthase |
Protein accession | YP_527482 |
Protein GI | 90021655 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain [COG1410] Methionine synthase I, cobalamin-binding domain |
TIGRFAM ID | [TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCCCC AGCTAAAGCA ACGTATCGAC TCCCTTTATG CCGCCCTCGA AGAGCGCATC CTAATTTTAG ATGGCGCAAT GGGCACCATG ATACAGAGCT ACAAACTGCA AGAAGCGGAT TATCGCGGCG AGCGATTTGC AAACCATCAC CAGGATTTAG GCGGTAATAA CGACCTGCTC GCCCTCACCC AGCCGGTTAT TCTTAGAGAT ATTCACCGCG CTTACTTAGA TGCGGGTGCA GATATACTCG AAACCAATAC CTTTAACTCC ACACAAATAT CGCAGGCCGA TTACGATACT CAAGAAATAG CCTACGAGTT AAACAAAGAA TCTGCAGCTA TCGCTCGCGC CGTAGCCGAT GAAGTAACCC TAGAAACCCC CAATAAGCCA CGCTTTGTTG CAGGCGTTTT AGGGCCAACC AGCCGCACTT GTTCCATATC GCCAGATGTT AACGACCCCG GCGCTCGCAA TGTGACCTAC GATGAGCTGG TAACCAACTA TAAAGAAGCC ACCCTAGGAC TTATTGAGGG CGGCGCCGAC ATTATTTTAA TCGAAACTAT TTTCGATACG CTCAATGCGA AAGCCGCGGT TTTTGCCGTG AAAACTGTAT TTGAAGACAT TGGCTATGAA CTGCCAATAA TGATCTCAGG CACGATTACT GATGCATCGG GCCGCACCTT ATCTGGCCAA ACAACAGAGG CGTTTTACAA CTCCCTTGCT CACGCTAAAC CTTTATCTAT AGGCTTAAAC TGTGCATTAG GTGCAGCAGA ATTAGAGCCT TACGTGCGAG AGCTTTCGCG TGTTTCGAAC TGTTATGTTT CAGCTCACCC CAACGCGGGC CTACCTAACG AGTTTGGCGA ATACGATCAA AGCGCCAAAG AAATGGCCGA TGTAGTAGAA AAATTTGCAG TTAAAAACTA CGTCAATATT ATCGGTGGCT GCTGCGGTAC CACGCCGCAA CATATTAAAG CTATCGCCGA GACTGTAAGC AAATACCCTG CTCGCAAAAT TCCAGATATC GAGCCCCAAT GCAGGCTCGC AGGCCTCGAG CCTTTTAATA TCTCTAAAGA CTCCCTTTTT GTAAACGTGG GCGAGCGCTG TAACATTACC GGCTCGGCCC GCTTTAAACG CCTTATATTA GAAGGCGATT ACACCACTGC CATTGAGGTC GCTCTACAGC AAGTTACCGA CGGTGCCCAG ATAATTGATA TCAACATGGA CGAAGGCATG CTAGATGCCG AAGCGGCCAT GATTAAGTTC TTAAACCTGC TTGCAGGTGA ACCCGATATT GCACGTGTTC CAATTATGGT GGATTCCTCC AAGTGGGATG TAATTGTTGC CGGTTTAAAA TGCATTCAAG GTAAACCCAT TGTTAACTCC ATTAGCCTTA AAGAAGGTGA AGCGGAGTTT ATTGAGCGCG CCCGTCTCTG CAAACTCTAC GGTGCAGCGG TTATCGTTAT GGCGTTTGAC GAAGATGGTC AAGCAGACAC AGCGCAACGC AAAATCGAAA TTTGTGAACG CTCGTATAAA GTACTTACCG AACAAGCTGG CTTTCCGCCC GAAGACATTA TTTTCGACCC CAATATTTTT GCTGTAGCAA CAGGTATTGA AGAGCATAAC AATTACGCCG TAGACTTTAT TGAAGCCACT CGCTGGATTC GACAAAACCT ACCTTATGCC GGCGTATCGG GTGGTGTAAG TAACGTGTCT TTCTCATTCC GTGGCAACGA CCCCGTACGA GAAGCCATTC ACTCTGTATT CCTTTACTAC GCAATTCAAG CGGGTATGAA TATGGGCATC GTAAACGCCG GGCAGCTAGC TATTTACGAC GACCTACCCA AAGAACTAAA AGACTGTGTT GAAGACGTTA TTCTTAACAA GAACGATAAC GGTACCGAAG CACTCTTAGA AATTGCAGAG CAATACCGTG GCGATGGAAA AGCGCAGGCC AGCAAAGAAG ATTTGGCCTG GCGCGAATTA CCCGTAGAAA AACGCTTAGA GCACTCGCTA GTAAAAGGGA TTTCTGCCTA TATTGAAGCC GACACCGAAG AAGCGAGACA AAACGCGAGC AAGCCTATCG ATGTAATCGA AGGGCCATTA ATGGCTGGCA TGAACGTTGT TGGCGACCTG TTTGGCTCCG GTAAAATGTT TTTACCGCAG GTTGTTAAGT CTGCACGTGT AATGAAGCAG TCCGTTGCCT ACTTACAGCC GTTTATCGAA GCCGAAAAAA CCGAAGGCGC TCGCAGCAAC GGTAAAATAC TAATGGCCAC CGTTAAAGGC GACGTACACG ATATTGGTAA AAATATTGTT GGCGTAGTAT TGCAGTGTAA CAATTTTGAT GTTGTTGATT TGGGCGTTAT GGTGCCGTGC GAGAAAATTA TCGACACAGC AATAGCAGAA AACTGCGACA TGATTGGCCT ATCAGGCCTT ATTACACCAT CGCTAGATGA GATGGTGAAT GTCGCGCGCG AAATGCAATC TCGCCAAGTA AACTTACCTC TGCTTATAGG TGGAGCCACT ACGTCTAAAG CACACACCGC AGTTAAAATT GACCCTCAAT TTTCGCTAAA CCAAGCCGTG TATGTTGCGG ATGCTTCGCG TGCAGTTGGT GTCGCCTCCA AGCTTCTATC CTTAGATCAA CGCGGGCCTT TTATTGCGTC CATAAAAGAA GAGTACGAAG CCGTTCGCGA GCGCCGAGCA AATAGAACAA GCAACAAGCA GCTTGCTACT TACGCCGACG CAGTCAACAA AAAGCTACAG CTAGATTGGA ATAAATTTAC CCCGGCGGTA CCCGCTTTTA CCGGAACTAA GGTTTTCGAA AATTATCCGC TCGAAAAACT GGTTGAATAT ATAGATTGGA CACCATTCTT TATTAGCTGG GACCTTGTAG GTAAATACCC GAAGATTTTT AAAGATGAAG TTATCGGCGA AGCAGCAACT CAGCTATTTA AAGACGCACA AGAAATACTT AAAAAGCTCA TAGATGAAAA GCTTATTCAA GCTAGCGCAA CTATAGGTTT TTGGCGTGCA AATACTATTG GTGACGACGA TATTAACGTT ATGGACGACA ACGGCAAAAC ACTAGCCGAG TTACATCATA TTCGTCAGCA ACAAATTAAA AATGGAGCCG ACGATGTGCT CATGTCTCTT GCGGACTTTG TAGCACCTCA AGATACCGGC CTTAATGACT ACATTGGCGG CTTTGTTGTA ACCGCTGGCC ACGGGGTAGA TGAGCTAGCT AAAGAGTACG AAGCAAAAGG TGATGACTAC AATGCAATCA TGGTAAAAGC GCTTGCAGAT AGACTTGCAG AAGCTTTTGC AGAGCATTTG CATCAGCGCG TTCGCAAAGA GTTTTGGGGT TACGACCAGG ACGAGAACCT CGCAAACGAA GATCTTATAC GAGAAAAATA TCAAGGCATT CGCCCCGCAC CAGGCTACCC CGCATGCCCA GATCACACAG AAAAGCGCGC TTTGTTTGAC TTACTGGATG CGGAAGCAAC TACAGGCGTT CAACTTACCG AGCACTACGC CATGTACCCT ACCGCAGCAG TTTCTGGCTG GTACTTTGCT CACCCGAAGG CAAAGTATTT CAATACGGGC AAAATAGCGA AGGACCAAGT TGAATCTCTA GCGTCGCGCA AAGGGTTAAG CACCGCAGAA ATGGAAAAGT GGCTGCAGTC GGTACTTGAT TACGATATTT AA
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Protein sequence | MNPQLKQRID SLYAALEERI LILDGAMGTM IQSYKLQEAD YRGERFANHH QDLGGNNDLL ALTQPVILRD IHRAYLDAGA DILETNTFNS TQISQADYDT QEIAYELNKE SAAIARAVAD EVTLETPNKP RFVAGVLGPT SRTCSISPDV NDPGARNVTY DELVTNYKEA TLGLIEGGAD IILIETIFDT LNAKAAVFAV KTVFEDIGYE LPIMISGTIT DASGRTLSGQ TTEAFYNSLA HAKPLSIGLN CALGAAELEP YVRELSRVSN CYVSAHPNAG LPNEFGEYDQ SAKEMADVVE KFAVKNYVNI IGGCCGTTPQ HIKAIAETVS KYPARKIPDI EPQCRLAGLE PFNISKDSLF VNVGERCNIT GSARFKRLIL EGDYTTAIEV ALQQVTDGAQ IIDINMDEGM LDAEAAMIKF LNLLAGEPDI ARVPIMVDSS KWDVIVAGLK CIQGKPIVNS ISLKEGEAEF IERARLCKLY GAAVIVMAFD EDGQADTAQR KIEICERSYK VLTEQAGFPP EDIIFDPNIF AVATGIEEHN NYAVDFIEAT RWIRQNLPYA GVSGGVSNVS FSFRGNDPVR EAIHSVFLYY AIQAGMNMGI VNAGQLAIYD DLPKELKDCV EDVILNKNDN GTEALLEIAE QYRGDGKAQA SKEDLAWREL PVEKRLEHSL VKGISAYIEA DTEEARQNAS KPIDVIEGPL MAGMNVVGDL FGSGKMFLPQ VVKSARVMKQ SVAYLQPFIE AEKTEGARSN GKILMATVKG DVHDIGKNIV GVVLQCNNFD VVDLGVMVPC EKIIDTAIAE NCDMIGLSGL ITPSLDEMVN VAREMQSRQV NLPLLIGGAT TSKAHTAVKI DPQFSLNQAV YVADASRAVG VASKLLSLDQ RGPFIASIKE EYEAVRERRA NRTSNKQLAT YADAVNKKLQ LDWNKFTPAV PAFTGTKVFE NYPLEKLVEY IDWTPFFISW DLVGKYPKIF KDEVIGEAAT QLFKDAQEIL KKLIDEKLIQ ASATIGFWRA NTIGDDDINV MDDNGKTLAE LHHIRQQQIK NGADDVLMSL ADFVAPQDTG LNDYIGGFVV TAGHGVDELA KEYEAKGDDY NAIMVKALAD RLAEAFAEHL HQRVRKEFWG YDQDENLANE DLIREKYQGI RPAPGYPACP DHTEKRALFD LLDAEATTGV QLTEHYAMYP TAAVSGWYFA HPKAKYFNTG KIAKDQVESL ASRKGLSTAE MEKWLQSVLD YDI
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