| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2007 |
|---|
| Symbol | |
|---|
| ID | 3967250 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 2527773 |
|---|
| End bp | 2528834 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637921095 |
|---|
| Product | phospho-2-dehydro-3-deoxyheptonate aldolase |
|---|
| Protein accession | YP_527479 |
|---|
| Protein GI | 90021652 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
|---|
| TIGRFAM ID | [TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACACG TAGAAGACCT GAACGTAGTG TCTCAGGAAG TGTTAATTAC CCCCGCTGAG
CTTAAGCAAG AATTACCTAT TTCTGCTGCT GCAGCGAAAA TGGTCACTGA AGGGCGCGAA
ACTGTGCGCA ATATTCTTGA CCGTAAAGAT CACCGCTTAA TGGTTGTTAT TGGCCCATGC
TCAATACACG ATCCAAAAGC TGCTATCGAC TATGCCAACC GCTTGAAAGC GTTGTCCGAT
AAGGTGCAAG ACACTCTCTA CATTGTTATG CGTGTGTATT TTGAGAAGCC AAGAACAACT
GTAGGCTGGA AAGGCCTTAT CAACGACCCT TACATGAACG ACTCCTTCAA AATTCAAGAT
GGGTTGCATG TGGGCCGCAA GTTGTTATTA GACATAGCCG AGCTGGGCCT ACCCACGGCC
ACCGAAGCGC TAGACCCTAT TTCGCCTCAA TACCTGCAAG ATTTAATTTC TTGGAGCGCT
ATTGGCGCAC GTACTACCGA GTCGCAAACA CACAGAGAAA TGGCGAGCGG CCTCTCCTCT
GCCGTAGGCT TTAAAAACGG TACTGACGGC GGTTTAACGG TTGCTATTAA CGCATTGCAG
TCAGTTTCTA GCCCGCACCG TTTTTTAGGT ATTAGCAAAG ACGGCTCTGT TGCGGTTATG
CATACCCGTG GCAACGAGTA CGGCCATGTT GTATTGCGCG GTGGTAACGG CAAGCCCAAC
TACGATTCAG TTAGCGTAGC TATTTGCGAA AAAGAGTTAG AGAAAGCCAA GGTTCCGGTA
AACATCATGA TCGACTGCAG CCACGCTAAC TCTAATAAAA ACCACGAGCT ACAGCCGCTG
GTAATGGAAA ATGTGAGCAA TCAAATTATT GAAGGCAACA AATCGATTAT AGGCGTGATG
ATTGAAAGTA ATATTGGTGC TGGCAACCAG AGCATCCCTG ATAATCTCGA TGATTTGGCC
TACGGTGTGT CTGTTACCGA TGCCTGTATT GATTGGCAAT CGACGGAAGA TTTACTGCTT
AGCACTGCAA GTAAATTACG AGAAGTTTTA CCCAAGCGCT AA
|
|---|
| Protein sequence | MSHVEDLNVV SQEVLITPAE LKQELPISAA AAKMVTEGRE TVRNILDRKD HRLMVVIGPC
SIHDPKAAID YANRLKALSD KVQDTLYIVM RVYFEKPRTT VGWKGLINDP YMNDSFKIQD
GLHVGRKLLL DIAELGLPTA TEALDPISPQ YLQDLISWSA IGARTTESQT HREMASGLSS
AVGFKNGTDG GLTVAINALQ SVSSPHRFLG ISKDGSVAVM HTRGNEYGHV VLRGGNGKPN
YDSVSVAICE KELEKAKVPV NIMIDCSHAN SNKNHELQPL VMENVSNQII EGNKSIIGVM
IESNIGAGNQ SIPDNLDDLA YGVSVTDACI DWQSTEDLLL STASKLREVL PKR
|
|---|
| |