| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1952 |
|---|
| Symbol | |
|---|
| ID | 3967058 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 2453188 |
|---|
| End bp | 2455362 |
|---|
| Gene Length | 2175 bp |
|---|
| Protein Length | 724 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637921040 |
|---|
| Product | putative cation-transporting ATPase membrane protein |
|---|
| Protein accession | YP_527424 |
|---|
| Protein GI | 90021597 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2217] Cation transport ATPase |
|---|
| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01511] copper-(or silver)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.51624 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.45395 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCTT TAACCGACCA TCAATCTTTT GAATTTAAAA TCGAGGGGAT GTCCTGTGCG
TCCTGTGTAA GACGTATTGA GAAGGCGCTG CTGGCAACCG ATGGGGTGAG CAGTGCCAGT
GTGAATTTTG CGACGGAAAC TGGAAAAGTT GAAGTCGGTG CTGACACCTC TCAAGACACT
ATTTATGCAG CGGTCAAAAA TGCTGGATAT CAAGCAATCG CTATGGAGGA CGCGTCGTCA
GTCAACGCTA CAAACCAAGG TGGTCGTTTA TTTATTTTGT CAGGGATGTT GACCATCCCT
TTGATGCTGC CAATGGTAGG GGAATGGTTC GGCTTTAACT GGTTACTGCC AATTGGGTTG
CAATTAATGT TGGCTTCTAT TGTGCAGTTT TACTTCGGTT TCCGCTTTTA TCGTGGTGCC
TACGCTGCGT TAAAGGCGCG CAGTGGCAAT ATGGATAGCC TGGTCGCACT TGGTACATCC
GCGGCCTATG GCTTGTCCAT TTATAACATT CTTATCGGTC ATGCAGGACA TTTGTATTTT
GAATCATCCG CAGTGATCAT CACGCTAGTT ATTCTAGGCA AATGGATGGA AGCCAGAGCC
AAAAATCAAA CCACCAATGC CATTCGCGCT CTTCAAGATC TTCGGCCTGA AAACGCTAAT
TTAATTGAAA ACGGTATTGA GAAAATTGTT CCCGCAAACA CATTGCAAAT TGAAAATATT
ATTTTAATTA AAGCTGGGGA GAGGGTGGCT GCCGATGGTG TTATCCTTTC TGGTAACGGT
TATCTCAATG AAGCTTTGAT TACCGGTGAA AGTCTACCGG TTGAAAAGCA GGAAGGCGAT
AAAGTGATCG GCGGCTCAAT TAACATCGAT GGTTTGCTTA CTGTAAAAGT CACATCCAGC
AATGCGGAAA GTACACTCGC AAAAATCATT CATTTAGTGG AGTCCGCACA GGCAAAAAAA
TCCCCTTTGC AAAAATTAGT CGACCGTATC AGCGCTGTTT TTGTGCCTGT TGTTTTAGTG
ATTGCACTGG TGACTTTGTT GACTTGGGGT TTTGTTACCG GCGATTGGAC GCAAGCGATT
ATCAGTGCTG TAGCCGTGCT GGTTATTGCT TGTCCCTGTG CACTGGGTCT GGCGACGCCA
ACCGCCATTA TGGTAGGGAC GGGATTGGCT GCCAAAAGAG GTATTCTTAT TAAAGATGCT
GAAATTTTGG AGTCCACAGA ACATGTTGAT GTGGTCGCTT TTGATAAAAC CGGCACCTTG
ACGGAGGGTA AACCCAGAGT CGAACAGATC GATGCATTTG TTGGAGAAGG AAAACAGTTG
CTGGGTTATT TAAAGGGTCT GCAGCAGGGC AGCGAACATC CACTTGCAAA GGCACTGCTC
GATCATGCAA CAAAAGAATC CATTATCGCC GAGCGCTTCG AGTTGATTCA TACCCTGCCA
GGCCTTGGAA TGCGCGGTCA GTTAGAAGAG GGTAATTACT GGTTTGGCAA TAAACGTTTG
ATGTTAAACG TCGGTATTGA AGCGTCTTTA CTCGAAGACT ATAGCGAAGA ATTTGCGATA
AAAGGCAATA CGCTCTCGTG GGTCGCGAGA CAAATAAAAC CCAATACGAT TGAGCTTTGT
GGTCTTGTGC AATTCCAGGA TACGCTTAAA TCCAGTGCAA TTGAAGCCGT CAGTCGATTG
CACGAATTGG GGATACAAAC CTGTCTGCTC ACTGGCGACA CACAAGACAG TGCGGACGTT
ATCGCCGCTA AATTGGGTAT TGATTTTGTT AGAGCGGAAG TGATGCCAGA ACACAAGGCC
GACGTGGTGA GTCAATTTCA GTTGGAGGGT AAAAAAGTGG CCATGGTCGG AGACGGCATT
AATGACACTC CCGCATTAGC AACGGCCCAT GTAGGCATAG CGATGGGGGC GGGTACCGAT
GTTGCGATGC AAACTGCGGG TATTACTCTA ATGCAAAGTG ATCCATTGAG GGTTGTTGAA
GCTATTACCA TTGCTAAAAA AACTCAACAG AAAATTCGTC AGAATCTGTT TTGGGCGTTT
ATCTACAACC TGGTTGGAAT TCCGCTTGCT GCTTTTGGAT TGCTTAACCC GATGGTGGCG
GGAGCTATTA TGGCTGTTAG TAGTGTGAGT GTTGTGCTCA ATGCATTGCT TCTCAGACTT
GTCAAAATCA CATGA
|
|---|
| Protein sequence | MKPLTDHQSF EFKIEGMSCA SCVRRIEKAL LATDGVSSAS VNFATETGKV EVGADTSQDT
IYAAVKNAGY QAIAMEDASS VNATNQGGRL FILSGMLTIP LMLPMVGEWF GFNWLLPIGL
QLMLASIVQF YFGFRFYRGA YAALKARSGN MDSLVALGTS AAYGLSIYNI LIGHAGHLYF
ESSAVIITLV ILGKWMEARA KNQTTNAIRA LQDLRPENAN LIENGIEKIV PANTLQIENI
ILIKAGERVA ADGVILSGNG YLNEALITGE SLPVEKQEGD KVIGGSINID GLLTVKVTSS
NAESTLAKII HLVESAQAKK SPLQKLVDRI SAVFVPVVLV IALVTLLTWG FVTGDWTQAI
ISAVAVLVIA CPCALGLATP TAIMVGTGLA AKRGILIKDA EILESTEHVD VVAFDKTGTL
TEGKPRVEQI DAFVGEGKQL LGYLKGLQQG SEHPLAKALL DHATKESIIA ERFELIHTLP
GLGMRGQLEE GNYWFGNKRL MLNVGIEASL LEDYSEEFAI KGNTLSWVAR QIKPNTIELC
GLVQFQDTLK SSAIEAVSRL HELGIQTCLL TGDTQDSADV IAAKLGIDFV RAEVMPEHKA
DVVSQFQLEG KKVAMVGDGI NDTPALATAH VGIAMGAGTD VAMQTAGITL MQSDPLRVVE
AITIAKKTQQ KIRQNLFWAF IYNLVGIPLA AFGLLNPMVA GAIMAVSSVS VVLNALLLRL
VKIT
|
|---|
| |