Gene Sde_1949 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1949 
Symbol 
ID3967055 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp2450726 
End bp2452138 
Gene Length1413 bp 
Protein Length470 aa 
Translation table11 
GC content50% 
IMG OID637921037 
Productputative 2-component sensor protein 
Protein accessionYP_527421 
Protein GI90021594 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID[TIGR01386] heavy metal sensor kinase 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.610571 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.744525 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGTTTG GATTTCGCCT GGCGCGACCT TTATCACTCA ACAATCGTGT GATGCTGTTT 
GTCGCACTTG CCATTAGTCT CAGCCTTGTT GTAATCGGCC ATCTCGTTCA GAAGTCAGTC
GAACAGCATT TTGCAGAACA AGACGCTGAC GAATTGGTTG TCATCAGCCG TGCCGTGGCA
GAAGCACTAA AAAAGACAAC ACGTTCAGGT CGTTCGGCCG ACGAAACACT TCCTCATGCT
GTTTCCGGTC ATCACGGTGT GTATTATCAG GTTTGGGACG AATCTGGTGC GCTGGTTTAC
GGCCCACATG AAGTAGTTTT TCCTCCCCGA GCTAGATTCA ATGCCCCGGT GTACACTATC
CGCGCCGACA ATCTTGTGAG TTGGCATATT GATGATAAAT CCTATCGAGG CGCGATGACA
CAAGTGCAAA TTGACGGCCG AAACTATCTC GTCACTGCGG CCATCAATAT GGACTTCCAT
ATGCGCTTTC TCGAACATTT CAGCCGCAAT TTATGGTTGA TCATGGCGCT GGCTGGTGGG
CTTACTTTAC TCGCAGCCTG GTACGGTGTG CATCAAGGGC ATGCGCCACT ACGGGCACTC
AGTGAATCCA TACGATCTGT TCAAGCCGAC CAATTGGATA TGCGACTGAA TGAAAAAGCT
GTTCCCATGG AATTGCAACC TCTGGTGGAG TCCTTTAACC AGATGATCAG TCGCCTTGAC
GACAGCTTCA CGCGCCTGTC CCACTTTTCT GCGGACATCG CCCATGAGTT GCGAACACCT
CTTACGAACC TCGCAACGCA AACCCAGGTC GGTTTGGGGC AAGCGAGAAC ACTTGAAGAG
TATCGGGAAT TGCTCTACTC CAATTTGGAA GAGCAAGAAA GATTGACCAA AATGGTAAAT
GACATGCTGT GGCTCGCGCA GAGTGAGAAC GGCCTACTTA AACCCAATTG GGAATTACTG
GATTTGAGGC AAGAAGTTGA AGCCACCTTC GAATTTTTCG AAGCCTTGGC GGAGGATAAA
AAAATTACAT TGGCTGTAGG GGGAGATCGC GTCAACGCGA TGGCCGATCG TTCGATGCTG
CGCCGAGTGA TTTCTAACCT TTTGTCTAAT GCGCTTCGTT ATACACCAGA GAACGAAACA
ATCAATGTCA CTGTTGAGGG GGTTGGCAAT CAGGCCCAAA TAACAATTGA AAACCCGGGG
CAGGGGATTT CTGCAGTGCA TCTACCGAAA CTCTTTGATC GCTTCTATCG GGTTGATCCA
TCGAGGCAGC GTCAGAGCGA GGGGGCAGGC TTGGGTTTGG CGATCGTGAA GTCAATCATT
GAGGCACATG ACGGAAATGT GGAGGTGTCC TCCGAAATGG GTACTACCCG GTTCGTTATC
TCGCTGCCAG CTCATGATAA AAAAGCAGGT TAG
 
Protein sequence
MAFGFRLARP LSLNNRVMLF VALAISLSLV VIGHLVQKSV EQHFAEQDAD ELVVISRAVA 
EALKKTTRSG RSADETLPHA VSGHHGVYYQ VWDESGALVY GPHEVVFPPR ARFNAPVYTI
RADNLVSWHI DDKSYRGAMT QVQIDGRNYL VTAAINMDFH MRFLEHFSRN LWLIMALAGG
LTLLAAWYGV HQGHAPLRAL SESIRSVQAD QLDMRLNEKA VPMELQPLVE SFNQMISRLD
DSFTRLSHFS ADIAHELRTP LTNLATQTQV GLGQARTLEE YRELLYSNLE EQERLTKMVN
DMLWLAQSEN GLLKPNWELL DLRQEVEATF EFFEALAEDK KITLAVGGDR VNAMADRSML
RRVISNLLSN ALRYTPENET INVTVEGVGN QAQITIENPG QGISAVHLPK LFDRFYRVDP
SRQRQSEGAG LGLAIVKSII EAHDGNVEVS SEMGTTRFVI SLPAHDKKAG