| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1930 |
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| Symbol | |
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| ID | 3967017 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 2431780 |
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| End bp | 2433669 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637921018 |
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| Product | membrane-fusion protein-like |
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| Protein accession | YP_527402 |
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| Protein GI | 90021575 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.3695 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAGTA AGAAATTTCT TAATTCTGCG ACGTTGATTG CGGCAGGTAT TGGGCTCGCT
TTGGGTATTG CAGCGACGCT GATTTTGGGT GGCGGAAATT CAACCGTGCA ATCTGAAGAA
AGCAAAAGTG AGGAACCGCT TTATTGGGTT GCGCCAATGG ACCCCAATTA TCGACGCGAT
AAACCTGGAA AATCCCCGAT GGGGATGGAT TTGATTCCTG TTTATGAAGA GGGCGAAAAA
GCCAACGATG AGGGGCCGGG TACCATCAAT ATTTCACCTG ACGTGATTAA CAATCTCGGT
GTGCGTACAG GGTTGGTAGA ACGTAAACGT CTGCATAGTG AAATAGTGAC AGTCGGCTAT
GTCCGCTACG ACGAAAATAA ACTTATTCAT ATTCATCCCA GATTATCGGG CTGGGTCGAA
AAGTTATATG TCAAATCTGC GGGTGATCCA GTTAAAAAAG GGGAACCCTT GTACGCACTG
TATTCTCCCG AGCTTGTTAA TGCACAAGAG GAATTGTTAT TAGCGATTAG CCGCAACAAC
ACTCGACTCA TTCAAGCCGC AGAAGACCGA CTTCGAGCTT TGCAAATACC GCGAGAATTT
ATTAATCAAC TTAAAAAGAC GAAGACTGTT CAGCAAACCG TAACTTTTTT TGCTCCGCAA
GGCGGTGTTG TCGATAACCT GAATATAAGA GAAGGGTTTT ATGTTCAGCC TGGCACGACG
ATGTTGAGTA TCGGCGCGCT TGACCCGATT TGGGTAGAAG CTGAAATTTT TGAGCGTCAA
GCCGCACTGG TTGAAATTAA CGACCCGGTG ACTATGACAT TGGATTACCT CCCCGGAAGA
ACCTGGACTG GACGGGTGGA TTATGTTTAC CCAACTTTGG ACAGCAAAAC ACGAACGGTT
CGATTGAGAC TGCGCTTTGA TAATCCAAAG GAGCTACTAA AACCGAATAT GTTTGCACAA
ATAACCGTGC ATACCGGTTC TGATGAAGAA ATGTTGGTCG TGCCTCGGGA AGCATTAATC
CGAACTGGAA CCCAGGACCG TCTCGTGCTT GCCCTCGGTG AGGGTAGTTT CAAATCTATA
AGCGTGAAAA TAGGGCGTCA AGATCAGAAT TGGGTCGAGA TTTTAGAAGG GGTTGACGAA
GGCGAGAAGG TTGTCACCTC CGCTCAGTTT TTGCTGGACT CAGAATCCAG CAAAGCCTCT
GATTTCAAAC GCTTGCACCA CGGCGGTGAT AAACCAAAAT CTGTGTGGGT AGCCGCAGAA
ATTCAAAGTG TGATGAATGA TCACAGAATG GTGACAGCGA GTCATGATCC CATTGCAGAG
TGGGACTGGC CATCCATGAC CATGGATTTT CGGATTAGTC CAAATGTTGA TATGAGTGCT
CTTAACCCTG GTACACAGCT TCACATGGAA ATCAGCAAGC TGAAAGATGG CGGGTATGAA
ATAACGGGCA CTCATATCAT GGGCACCAAA AGCCAAACAG CGGAAGTTCA ATCCGCACAA
GTTAATGGCG TCGTGAATAC TGTTGACACA ATAAATCGAA CAGCCAATAT CCACCGGGGC
CCAATACCAA AGTGGAATCG ACCCTCGGCA ACAATGGATT TTTATGTCAG TGATGACGTA
GACATCAAGC AACTTTCACC AAAGGCCTCA ATATATTTTG AATTCGAAAT CCAGGATGGT
GAATTTGTTA TTACCCGATT ACTAGAGGAT GAAGTGATGC CGGACCGAGG GACTGATCAC
TCTTTAGATT CATCGTCAGC AGATCACAGC GGCATGGATC ACAGCCAGAT GGACCATTCC
AAAATGAATC ACGCTGTAGA AAGCATCGAC GAAGTGGATC ACACACAAAT GGATCACTCT
AGTCACATCC GCTCTAGTGA CAAGGAGTAG
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| Protein sequence | MTSKKFLNSA TLIAAGIGLA LGIAATLILG GGNSTVQSEE SKSEEPLYWV APMDPNYRRD
KPGKSPMGMD LIPVYEEGEK ANDEGPGTIN ISPDVINNLG VRTGLVERKR LHSEIVTVGY
VRYDENKLIH IHPRLSGWVE KLYVKSAGDP VKKGEPLYAL YSPELVNAQE ELLLAISRNN
TRLIQAAEDR LRALQIPREF INQLKKTKTV QQTVTFFAPQ GGVVDNLNIR EGFYVQPGTT
MLSIGALDPI WVEAEIFERQ AALVEINDPV TMTLDYLPGR TWTGRVDYVY PTLDSKTRTV
RLRLRFDNPK ELLKPNMFAQ ITVHTGSDEE MLVVPREALI RTGTQDRLVL ALGEGSFKSI
SVKIGRQDQN WVEILEGVDE GEKVVTSAQF LLDSESSKAS DFKRLHHGGD KPKSVWVAAE
IQSVMNDHRM VTASHDPIAE WDWPSMTMDF RISPNVDMSA LNPGTQLHME ISKLKDGGYE
ITGTHIMGTK SQTAEVQSAQ VNGVVNTVDT INRTANIHRG PIPKWNRPSA TMDFYVSDDV
DIKQLSPKAS IYFEFEIQDG EFVITRLLED EVMPDRGTDH SLDSSSADHS GMDHSQMDHS
KMNHAVESID EVDHTQMDHS SHIRSSDKE
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