Gene Sde_1923 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1923 
Symbol 
ID3967010 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp2424122 
End bp2425831 
Gene Length1710 bp 
Protein Length569 aa 
Translation table11 
GC content39% 
IMG OID637921011 
Productresponse regulator receiver domain-containing protein 
Protein accessionYP_527395 
Protein GI90021568 
COG category[T] Signal transduction mechanisms 
COG ID[COG0784] FOG: CheY-like receiver 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.285353 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGTAGGCA ATGCGATTAA ATTTACTGAA AGTGGGTATG TGAAGGTAAG TGCACGTAAT 
AATGAACACG GCGATTTTGT CTGTACTATA GAAGATACTG GTATTGGGAT ATCAAACAAA
CAAATGGAAC GCCTATTCAA AAGCTTTACT CAGGCTGATG CTTCAACGAC CAGAAAATAT
GGCGGTACCG GTTTAGGGCT AGTGATTTCG CAGCGGCTTT GCAAACTGAT GAATGGGGAT
ATATCGGTTC GCAGCCAATT GCATAAAGGA ACATGCTTTA CCGTCTCGTT ATCGCTGCCA
GCTACTCAAG AAGTGCAAGA TAAACTAAAA GAGAAGCATA TACTTCAAGA AGATGCAAAA
GAATATGATT ACATCGTGTT CGATGCCTCT ACACAGCGCG CGAGCGCAAT AGTAAAGCAA
ATGCAGAAGT TTCAGTGTAA TGCTGTTTTT GCAGAAGAAG ATAAGTACGA GGATTTGAAT
GCAGCGCTTG CGCAGTTAGT AGATATAGAG ACCAATAAAC CGAAGCTATT TATCATCGAT
TCGGACAAGC TAGATACTAA TTTTGCTAGT GCGTTAATTG ATGTTTTAGA AAAAAGAAAA
CGCCATGGGG CTAGTGATGG CTTGCTGCTG TTAGCTAATG TTGAGGTAGA TATTGACAGC
TGGCGAAATG AAAATCAGCA GGGTTTAATG CCTATTATTG CATATCCCCA CCACATACTA
ACGAAGCCTG TTACGCCTAG GCTACTTATT CGAGCAATAA ACCACGCTGT AGTTAATGCC
GCGCAGGGGA TAATTCATTC GCCTACACTA GAAGAAAAAG CACTATTACT GGAAAATCGA
GAAGAGCAAG AGCGAGCGAT AGTTAGAGTG CCAAGTGAAA ATAGCCCTAA AATATTACTG
GTAGATGATA ACGCGGTTAA CCGTGAAGTT ATTTTAGGTA TACTGGAAGA CGAAGATTTT
CAAATAGAGA CCGCTGTAAA TGGGCAGGAT GCGCTAGCTG CGTTGACAAG ATCGAGTCTT
AATTTCGATC TTATTTTAAT GGACTGTCAA ATGCCGGTAA TGGATGGCTA CAAAGCTACA
CGAGAAATAA GAAGTAGTGA AATTTTAAAA CACTATAAAC ATATTCCTAT TATTGCATTA
ACTGCAAATG CAATGGCAGG GGACAAAGAA ACCTGCTTGG CTTCAGGTAT GTCCGATTAT
TTATCCAAAC CTATTGATGG AGAGCAGTTG CTATTAATTA TAAGTAAATG GATAAAACCG
AAATTAGAGG CGGGTAATAC TGAACCATTG AGTTGCGAAT TGAACACAAC CGCGCAAAGT
GAAGGCTCTA CAAATACTAA GCCTGTAATA TGGGATTTTG AGACAGTCTT GAAGCGTATA
AATAATAAAA CAGAGCGCTT ACAAAAGCTG ATTCAACTTT TTGTAAGCAA CATGCCAGCT
AATATTGATA AGCTTAAAAC AATAAATATA ACGGAGGATT GGACTGATGC GCAATATATC
GCGCATAGCA TTAAAGGCTC TGCAGCTAAT TTGAGCGCGT TACTTGTCAC AGATGCGGCT
GAAGACTTAG AGTTATTGTG TAAGCAAGCA GACGCTTATA TTGATATGGA AGCTTTTAAA
GAGTCTTATT TAATTAAAGT ATCAGCATTA AGCGCTAGCT ACAATGAAAC GCTAGTTGAA
TTTGACTCGT TTTCAACCAG TAAAAGTTAG
 
Protein sequence
MVGNAIKFTE SGYVKVSARN NEHGDFVCTI EDTGIGISNK QMERLFKSFT QADASTTRKY 
GGTGLGLVIS QRLCKLMNGD ISVRSQLHKG TCFTVSLSLP ATQEVQDKLK EKHILQEDAK
EYDYIVFDAS TQRASAIVKQ MQKFQCNAVF AEEDKYEDLN AALAQLVDIE TNKPKLFIID
SDKLDTNFAS ALIDVLEKRK RHGASDGLLL LANVEVDIDS WRNENQQGLM PIIAYPHHIL
TKPVTPRLLI RAINHAVVNA AQGIIHSPTL EEKALLLENR EEQERAIVRV PSENSPKILL
VDDNAVNREV ILGILEDEDF QIETAVNGQD ALAALTRSSL NFDLILMDCQ MPVMDGYKAT
REIRSSEILK HYKHIPIIAL TANAMAGDKE TCLASGMSDY LSKPIDGEQL LLIISKWIKP
KLEAGNTEPL SCELNTTAQS EGSTNTKPVI WDFETVLKRI NNKTERLQKL IQLFVSNMPA
NIDKLKTINI TEDWTDAQYI AHSIKGSAAN LSALLVTDAA EDLELLCKQA DAYIDMEAFK
ESYLIKVSAL SASYNETLVE FDSFSTSKS