| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1899 |
|---|
| Symbol | |
|---|
| ID | 3966963 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 2399867 |
|---|
| End bp | 2401054 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637920984 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_527371 |
|---|
| Protein GI | 90021544 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3287] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.598311 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGATTC ACCTGTTTTA CACCTATCAT TTAAAGGCAG TTTTTAAAGA TAGGCGAAAC
ATGAACGTTC AACAGTACAG CATAAACACG CTACCACTAG AACCGACCCA AGAAACCGAT
TTAGTGTTCA TTTTTTCAGG TGAGCACCGC GATGAGTTTG CTGCAAACTA TGAGCGTGCA
CGCACAGCCT TCCCTTGCGC CACGATTGTA GGCTGTTCGA CAGCAGGCGA AATAGAAGAC
ACCAGGGTAA CAAGCAATCA TTGCGTAATA ACTGCGGTTA CCTTCAAGAA TACGTCAACA
TTCAGCGTGT GCGCCGAAGT CACAGATATA GCCCACTCCA AACGTGCAGG AGCACAATTA
GCTCAAAAGC TTCTCGCCCA CAGAAACACA CCGCTAAAAC ATATTTTTGT GCTCTCAGAC
GGCTTGAATG TCAATGGCAG CGAACTGGTT ACCGGCCTAG TTGAATCTGT ACCCAGCTAC
ATATCCGTTA CCGGTGGCCT TGCAGGCGAC AATGGTGACT TCACTTTTAC CCAAACCATC
GCAAACGGCG CCCCCAAAAC CGGCCAAGTG GTTGCCGTAG GGTTTTATGG CGACGGCATT
CATGTTGGTC ACGGTTGTAT GGGCGGCTGG GACCCCTTTG GCACCGAGCG GCTAATAACA
CGTTCACAAG CTAACGTACT GTACGAACTA GACGGCAAAC CTGCACTACA ATTATACAAG
CAACACCTTG GCGAACACGC CCAAAGCCTG CCTAGCGCTG GCCTCCTGTT TCCACTAACC
ATTCGTGAAG AAGGATCGAA TACAACACTT GTTAGAACAA TTTTAGGCGT AGATGAAAAA
GACCAAAGTG TGACGTTTGC CGGCAATGTC CCCACTGGGC AGTATGCCCG TTTTATGAAA
GCCAACTTCT CTCGCTTAGT TTCTGGCGCC GAGAATGCCG CTAACGAAAG TGTTAAACAC
TTTAATTCGG ATGAAGCAGA GCTAGCCGTT TTAGTAAGCT GTGTGGGTAG AAAAATGATT
CTTAAGCAAC GGACAGAAGA AGAAGTAGAA GCTGTAAGAA GCGTTTTAGG CCCGCAGGTT
GCTGTAACAG GTTTCTATTC ATACGGTGAA ATATCTCCCC ATACACCTAC GGCAAAATGC
GAGCTGCACA ATCAAACAAT GACTATTACA ACGTTTTGGG AAGAATAA
|
|---|
| Protein sequence | MAIHLFYTYH LKAVFKDRRN MNVQQYSINT LPLEPTQETD LVFIFSGEHR DEFAANYERA
RTAFPCATIV GCSTAGEIED TRVTSNHCVI TAVTFKNTST FSVCAEVTDI AHSKRAGAQL
AQKLLAHRNT PLKHIFVLSD GLNVNGSELV TGLVESVPSY ISVTGGLAGD NGDFTFTQTI
ANGAPKTGQV VAVGFYGDGI HVGHGCMGGW DPFGTERLIT RSQANVLYEL DGKPALQLYK
QHLGEHAQSL PSAGLLFPLT IREEGSNTTL VRTILGVDEK DQSVTFAGNV PTGQYARFMK
ANFSRLVSGA ENAANESVKH FNSDEAELAV LVSCVGRKMI LKQRTEEEVE AVRSVLGPQV
AVTGFYSYGE ISPHTPTAKC ELHNQTMTIT TFWEE
|
|---|
| |