| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1898 |
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| Symbol | |
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| ID | 3966962 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2397116 |
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| End bp | 2399857 |
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| Gene Length | 2742 bp |
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| Protein Length | 913 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637920983 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_527370 |
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| Protein GI | 90021543 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.456736 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGAAT ATCACCAGTT ACTGAAGCGC CAAATAGGAA AACACCTAAC CGACACTACG
GCTCAAACCT CTGGTGACCT CGAACCGTTT TTTTCCGCCG TAAGCAAGGC ATACCATGAG
TTCGACGAAG ATCGCAACCT ACTAGAACGG TCGTTAGAAA TAAACTCTGC AGAGCTACTG
GAAAAGAACA CCGAGCTGCG TGCGATGTTT GCCGCTATAC CCGAAGTACT TATCCTGCTC
GACGAAAACG ACAAAATTAT TTCGTTCCAA GATAATGAAC ATCAAGCAGC GCATTTTATC
TTTGCAGTTG AAAAAGTGGG CAAATATTTG CGCGATGTAA TGCAATCAGA AATATATAAA
GATTTACTTG CAACCGTAAA AACGTCACGC ACAAAAAACG CGAAAACCAC GTTTGAATTT
AGCCAAAATA CCAGCCAAAA CGACCAACGT CACTACGAAA GCAGAATAAT CCCTATAACC
CAAAGCGTTA CTATGCTTTT AATTAGGGAT ATAACTGACC GCAAACAAAA AGATTTAGAT
ATTCTCACCA GCGTAAGGCG CTTAGAGCTT CAGAACGAAG TACTACTTGA GCTAAACACC
CGCACAGAGT CGCACAACGA CCTGGAAGCG TTCTATAAAA CACTCGCCGC ATCGGTGGCA
AAAGCACTTA ACGTTCAAGA AGTAAGCCTA TGGTTTGTTG ATGAAAAAGA AAAATGCTTC
CAATGCGCTT TACACTACAA CGCACGAACC AAAATAATCA AAAAAGGCAG CACCTTAGAG
CTTAAAAACA TACAAAACTA TACGGCTGCA TTACACAGTG GTCGAGCCAT GGTTGTTGAA
AACATATACG ACGACCCTCG GGCGATAGAA ATAGAAAAAG ACGGCACGGT TGGCGCCTTT
ATTCATGCTC CCATCCGAGC CTCGAGTAAG TTATTGGGCG TATTGCGAAT AGAGCAATCA
GAAGTAAAAC GTAAATGGCG ACCTGATGAG CAGCAATTCG CTGCTTCGGC TGCCGACTTA
ACCTCACTTG TATATGAACG CTGGCAGCGC GAAGCTACCC AGCTCGCGCT GCAAGAAAGC
GAAGAGCGCT TTAAAGTACT GGCAGAAACA ACCGAGGTTG CCATATTTGC CATGCGTGAA
AAGTTTGTAT ATGCCAACCC CGCCATGGAA AGACTTATTG GGTACACAGA AGAAGAGCTG
CGCGCCCTTT CTGTAAAAAT TTTATTTGGC GAAGTATTCG CGTCCAACTT TCCAAGACTG
TCTAGTGTAA AAAACTCTGC AAAGAGCAAA ATCCAAAAGT TAGAAGTTGA AGTCGCAACA
GGTAAAGGTG AATCCGTTTG GCTGCACACC AATGTTGCGC CTGCCATGTT CGATGGTCAG
CTAACCTGGC TTGCCAGCGC ATTCGACATT ACCGAGCAGA AAAGCACAGA AGCACGCTTG
CGCTACCAAG CATATCACGA TCGATTAACT GGCTTGCCTA ATAGAGCCAA ACTAATGGAA
TCGATTAGTC GTTGCTTAGA AAAAGCCAGC AGAGATAAGT ATTATCGCTT CGCAATATGC
TTTGCAGATA TAGACCGATT TAAAAGTATT AATGATAGCC TGGGGCATTT GGTTGGCGAC
CAATTGCTAC TTGAGGTTGC TAGGCGCTTA ACGTCCAACA TATCACCGCT CGACCTTGTT
GCAAGAATAG GCGGAGATGA ATTTATCTTG CTTATCGACA ATATTACCAA TGAAGATGAC
ATACACGCTC TAGTAAAATC GCTTCAAACC GCTATTTCCA AGCCCATTGC AATTTCACCA
CACGAACTTG TTACTAGCGC GACCTTTGGT GTGGCTATTG TGGATCACAA CTATGAGCAT
GCTGAATCTA TACTGCGCGA CGCCGATCTC GCCATGTATC AAGCCAAAAC CCAAGAGTCA
TCTCGCTTGT GCATATTCGA TACCGATATG CGCAACCTGC TACAACAACA AATTGAAACT
GAAAACGATC TACGCAATGC CATTCACAAC AACGAATTGC GACTTGCCTA TCAGCCCATT
GTAGATTTCA AAACAGGTAA AACCGTTTTC TTCGAAGCCT ATGTAAAATG GCGCCGCAAA
AAGCTCATCG CCCCTACTGT TGAAGGATTT ACCCAACGTC CAGAAGATAC GGGCGCGCTG
ATTCCCGCCG GCGAGTGGAT GCTAAGAACT ATAGTGCAAC AGCTTACAGA TTGGTCCCTG
ATGCACGAAC CCACGCCTAT CAGCGTTAAC CTTTCTGCAA GACAATTCGA AACTGCAAGT
TTGCTCGAAC GCGTTATTAA TATACTGCAA TCTAGCCCTG CAGCTAAAAA TAAAATATGC
ATAGAGGTAA AAGAGAGCTT TTTAGATTCC AACACCTTAC ATGCAAGCAT GGACAGGCTA
AAAAGTATTG GTTGCGACGT ACTCGTAGAG GGTTTTGCTA ATGGGCTCGC AGACTGCGCA
AGCCTTAACG CATTACCTAT AAAAATAATA AAACTTCACC CCAATATTAC AAACACCATA
GACCAAGGCG ATGCTTATCA GGCATTCGCT AAGGCATCTA TCGATTTACT ACACAGCTTT
GGTTTTAAAG TTGTTGCTCA GGGCATTCAA ACCAGGCGCC AGCTTAAAAC CCTAATTGCA
CTGGGTTGCG ACTTCGGTCA AGGGGAATAT TTTTCTGAAC CTATAGGCCA AGAAGTGGCG
TTTACACAAA TGGCACACAC CTGGGACGAG GTATTGCTTT AG
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| Protein sequence | MSEYHQLLKR QIGKHLTDTT AQTSGDLEPF FSAVSKAYHE FDEDRNLLER SLEINSAELL
EKNTELRAMF AAIPEVLILL DENDKIISFQ DNEHQAAHFI FAVEKVGKYL RDVMQSEIYK
DLLATVKTSR TKNAKTTFEF SQNTSQNDQR HYESRIIPIT QSVTMLLIRD ITDRKQKDLD
ILTSVRRLEL QNEVLLELNT RTESHNDLEA FYKTLAASVA KALNVQEVSL WFVDEKEKCF
QCALHYNART KIIKKGSTLE LKNIQNYTAA LHSGRAMVVE NIYDDPRAIE IEKDGTVGAF
IHAPIRASSK LLGVLRIEQS EVKRKWRPDE QQFAASAADL TSLVYERWQR EATQLALQES
EERFKVLAET TEVAIFAMRE KFVYANPAME RLIGYTEEEL RALSVKILFG EVFASNFPRL
SSVKNSAKSK IQKLEVEVAT GKGESVWLHT NVAPAMFDGQ LTWLASAFDI TEQKSTEARL
RYQAYHDRLT GLPNRAKLME SISRCLEKAS RDKYYRFAIC FADIDRFKSI NDSLGHLVGD
QLLLEVARRL TSNISPLDLV ARIGGDEFIL LIDNITNEDD IHALVKSLQT AISKPIAISP
HELVTSATFG VAIVDHNYEH AESILRDADL AMYQAKTQES SRLCIFDTDM RNLLQQQIET
ENDLRNAIHN NELRLAYQPI VDFKTGKTVF FEAYVKWRRK KLIAPTVEGF TQRPEDTGAL
IPAGEWMLRT IVQQLTDWSL MHEPTPISVN LSARQFETAS LLERVINILQ SSPAAKNKIC
IEVKESFLDS NTLHASMDRL KSIGCDVLVE GFANGLADCA SLNALPIKII KLHPNITNTI
DQGDAYQAFA KASIDLLHSF GFKVVAQGIQ TRRQLKTLIA LGCDFGQGEY FSEPIGQEVA
FTQMAHTWDE VLL
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