| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1891 |
|---|
| Symbol | |
|---|
| ID | 3966955 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 2386337 |
|---|
| End bp | 2387524 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637920976 |
|---|
| Product | mannonate dehydratase |
|---|
| Protein accession | YP_527363 |
|---|
| Protein GI | 90021536 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1312] D-mannonate dehydratase |
|---|
| TIGRFAM ID | [TIGR00695] mannonate dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTCTC TTCCCTATTT GATGGCTCAA ACCATGCGCT GGTTTGGCCC TTCCGACCCA
GTATCTTTAC GCGATATACG CCAAGCAGGC TGCACCGGCG TTGTAAGCGC ATTGCACCAT
CTACCCAACG GTGCAATTTG GCCGCTTGCT GAAATTCTTG AGCGCAAACA GCTTATAGAG
AAAGCTGGTT TAGAATGGAA GGTTGTAGAG AGTGTGCCTG TGCATGAGCA TATAAAAACC
CAACAGGCAG GGTTTGAAGA GCTAATAGAA AACTACAAAC AAACCATCCT TAATTTAGGG
CAAGCAGGCA TAGAGGTTAT AACCTACAAC TTTATGCCAG TGCTCGATTG GACAAGAACT
AACTTAGATT TCGAGCTTGC AGATGGCGCC AAAGCGCTTA AGTTCGAACG CTTAGCACTC
GTAGCTTTCG ACGTATACAT GCTACAACGC CCAAATGCAG AAAAAGACTA CACCACAGAG
GAAAAGGAAC AGGCGCTAGA TTGGTTAAAT TCGCTTACCG ACACCGACAA AGCCACCTTA
GAGCGCAATA TTATTGCTGG CTTACCCGGT AGCGAAGAAA GCTTCACCCT CGCAGAATTT
CAACAAGCCT TAGACACCTA CGAAGGAATA GATGAAGCCA AACTTCGTGA GCATCTAATT
TACTTCTTGT CTGAAGTTTG CCCCGTAGCA GATTCAGCCG GAGTGAAGAT GGCCATCCAC
CCCGACGACC CACCCTGCTC TATCTTGGGG TTGCCGCGTA TTATTAAAAA TCGACAAGAC
ATAATTAGCT TAACTAAAGC TGTGCCTAAC CCCTCCAATG GCTTGTGCTT TTGCGCCGGC
TCCTATGGTG CGAGCGTAGA CAACGACCTG CCTGCAATGG TTGAAGAGTT TGGCGAAAGA
GTTAACTTTC TACACCTTAG AAACGTTATT CGCGATGCAG CGGGAAACTT TATGGAAGCC
GCCCACTTAG ACGGTGATAC GGATATGTAC GAGCTGGTAT CAGCTATTCG CAGAGTATCA
ATTAAACGTC AAGTTTCTAT CCCAATGCGC CCAGATCACG GCCACCAAAT GATGGACGAT
CTCGATAAAA AAACCAACCC GGGCTATTCA GGCATAGGCC GAATAAAAGG TTTAGCCGAA
ATACGCGGCT TAGAAATAGG AATCGCTCGC GCTATGAGCA ACGGCTAA
|
|---|
| Protein sequence | MASLPYLMAQ TMRWFGPSDP VSLRDIRQAG CTGVVSALHH LPNGAIWPLA EILERKQLIE
KAGLEWKVVE SVPVHEHIKT QQAGFEELIE NYKQTILNLG QAGIEVITYN FMPVLDWTRT
NLDFELADGA KALKFERLAL VAFDVYMLQR PNAEKDYTTE EKEQALDWLN SLTDTDKATL
ERNIIAGLPG SEESFTLAEF QQALDTYEGI DEAKLREHLI YFLSEVCPVA DSAGVKMAIH
PDDPPCSILG LPRIIKNRQD IISLTKAVPN PSNGLCFCAG SYGASVDNDL PAMVEEFGER
VNFLHLRNVI RDAAGNFMEA AHLDGDTDMY ELVSAIRRVS IKRQVSIPMR PDHGHQMMDD
LDKKTNPGYS GIGRIKGLAE IRGLEIGIAR AMSNG
|
|---|
| |