| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1886 |
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| Symbol | |
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| ID | 3966950 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 2381162 |
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| End bp | 2382763 |
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| Gene Length | 1602 bp |
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| Protein Length | 533 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637920971 |
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| Product | pseudouridine synthase, Rsu |
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| Protein accession | YP_527358 |
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| Protein GI | 90021531 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGTACCTC GGTTTAATAC AGCAGTAGAG CTGCTGGAAT TCGCATTTAA AAACTACCCC
CAAAACAGAG CATATACCTG TGCTGGTCAC ACGTTAACTT TTGACGAAAT AGAAAAGTTA
AGTGCCGAGT TTGCTTATTA TTTGCAAAAC GTACTTAAGC TAGAGCCTGG CGATCGCATA
GCCATGCAAC TGCCTAACGT ATTGCAGTAC CCCGTAGCAT TGTACGGTGC TATTCGTGCG
GGTTTGGTTG TGGTTAATAC CAACCCTTTA TATACCGCGC CAGAAATTGA ACACCAGCTA
AATGATAGCG GTGCGAAGGC ATTGGTTGTG CTTTCTAATA TTGCTGCCAA TGCAGCAAGT
ATTATTAAAA ACACCAAAGT CGAGCACGTA ATTGTTACCA ATTTCGCTGA TTTACACCCA
GCCCCCAAGC GCTGGATTAT TAACGCTGTT GTTAAACATG TTAAAAAAAT GGTGCCAAAA
TTCCATTTTG AATCACAACA TGCGTTTAGA GCGGCTGTTG GTCACGGTAA AACCAGCTTT
ACTAAACACG CTAAAACGTC AGATGATTTG CTTGTACTGC AATATACAGG CGGTACTACA
GGTGTGGCCA AGGGGGCTAT GCTCACGCAC GGCAATTTAA CCAGCAATGT TTGGCAAATG
ATTGAGCATA TGCCAAATGC CTATGTGCCG GGTAAAGAGA CCTTTTTAGC TTGCTTGCCG
CTTTATCACA TCTATGCATT TAACCTACAC GCGCTGTCGG CTTTTTGTTA CGGTGAACAC
AATATTCTTA TACCAAACCC GCGCGATTTA CAGAGTTTGG TCGATGCTAT TAAAAATGAA
GACCTCACGG TGATGATCGG CATTAATACT TTGTTTAATG CGCTGTGCCG GTTTGAACCC
TTTTTAGCCT TAAATTTTGA TCGCTTAAAA ATAACTTCTT CTGGCGGAAT GGCATTGACT
ATGGATGCTG CTCACACTTG GGAGAAAATT ACCGGCTGTA AAGTAGTCGA AGGTTACGGT
TTAACGGAGG CTTCCCCTGT TGTGAGTGGT AATCCGTCTG ATGCTATTCA GTTGGGTACA
ATTGGTGTGC CGTTACCAGA AACGCAGGTT AAAATTGTAG ATGATATGGG TAACGAGTTA
CCTCAAGGTG AAACCGGCGA GCTTTGTGTG AAAGGCCCAC AGGTAATGCC CGGTTACTGG
AATAAACCTG AAGAAACTAA AAAAGTGCTG TCGGATGGCT GGTTGCGCAC AGGCGATATG
GCGCTTATTC AGGCAGACGG TTACTTAAAA ATAGTAGACC GTAAAAAAGA CCTTATTATT
GTGTCTGGCT TTAATGTTTA CCCTAATGAA GTTGAAGACG TTATTACTCA GCACCCAGCA
GTAATAGAAG CTGCAGCTGT AGGCATGGCT GATGCTGAAT CGGGAGAGCG GGTTAAAGTA
TTTGCAGTTG TAAGCGATAC TAATGTGACC GAGCGGGAAC TAGTCGATTT TTGTAAAAAA
AGCTTAACTG GCTATAAAGT GCCCAAGAAA ATAGTATTCC GCGAAGCATT ACCTAAAACC
AATGTGGGTA AAATTCTACG CCGAGAATTG CGCGACGAGT AA
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| Protein sequence | MVPRFNTAVE LLEFAFKNYP QNRAYTCAGH TLTFDEIEKL SAEFAYYLQN VLKLEPGDRI
AMQLPNVLQY PVALYGAIRA GLVVVNTNPL YTAPEIEHQL NDSGAKALVV LSNIAANAAS
IIKNTKVEHV IVTNFADLHP APKRWIINAV VKHVKKMVPK FHFESQHAFR AAVGHGKTSF
TKHAKTSDDL LVLQYTGGTT GVAKGAMLTH GNLTSNVWQM IEHMPNAYVP GKETFLACLP
LYHIYAFNLH ALSAFCYGEH NILIPNPRDL QSLVDAIKNE DLTVMIGINT LFNALCRFEP
FLALNFDRLK ITSSGGMALT MDAAHTWEKI TGCKVVEGYG LTEASPVVSG NPSDAIQLGT
IGVPLPETQV KIVDDMGNEL PQGETGELCV KGPQVMPGYW NKPEETKKVL SDGWLRTGDM
ALIQADGYLK IVDRKKDLII VSGFNVYPNE VEDVITQHPA VIEAAAVGMA DAESGERVKV
FAVVSDTNVT ERELVDFCKK SLTGYKVPKK IVFREALPKT NVGKILRREL RDE
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