| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1885 |
|---|
| Symbol | |
|---|
| ID | 3966930 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 2379224 |
|---|
| End bp | 2381011 |
|---|
| Gene Length | 1788 bp |
|---|
| Protein Length | 595 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637920970 |
|---|
| Product | putative acyl-CoA dehydrogenase |
|---|
| Protein accession | YP_527357 |
|---|
| Protein GI | 90021530 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.137162 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGATT ACAAAGCGCC TATTAGAGAT ATTAAATTCG TTATGTATGA GCTGATGGGC
TTTGAAGAGC ACTATCAAAC CATGCCCAAT GGCGAAGATG CCTCTCAAGA TGTTGTAGAA
GCCATACTTG AAGAAAGTGC AAAGTTTTGC GAAAACGTAT TGGCCCCACT TAACTCTGTG
GGCGACGAGC AAGGCTGCAC ATGGAATGAT GGTGTAGTAA CCACTCCGGA TGGCTTTAAA
GCTGCCTACG AACAGTTCGT AGAGGCCGGC TGGCCATCGA TGACCCATCA CACCGAATAC
GGCGGGCAGG GGCTACCTGA ATCGTTGGGT ACAGTATTAA GTGAAATGAC AGGCACCTCA
AACTGGGCTT GGTGTATGTA CCCAGGTCTT TCTCACGGTG CGATGAAAAC CCTAGAGCTG
CACGGTACCG AAGAGCAAAA GTCTACCTAC CTCACCAAAC TCGTTGAGGG CGCATGGACA
GGAACAATGT GCTTAACCGA AGCCCATTGC GGTACTGATT TGGGCATGTT GCGTACCAAA
GCCGAGCAGA ACGAAGATGG CAGCTATTCT ATTTCCGGCA CCAAAATATT TATATCTGCG
GGTGAGCACG ATTTAGCCGA AAACATTGTC CACATTGTGC TCGCACGCTT ACCTGGTGCT
CCTGAAGGCA CCAAAGGTAT TTCACTATTC ATTGTGCCCA AATTTTTACC CTCAGATGAC
GGTAGTGTAG GGGAGCGCAA CCAGGTGGCC TGTGGCTCGC TTGAAGAAAA AATGGGTATT
CACGGCAACG CTACCTGTGT AATGAATTTT GATGGTGCTA AGGGCTATTT AATAGGGCCA
CCCAATAAAG GCTTAAACTG TATGTTTACC TTTATGAATA CGGCCCGTTT GGGAACCGCT
TTGCAGGGTT TGGCACACGC TGAGTTGGGC TACCAAAAGT CCTTAGCCTA CGCGAAAGAT
CGTATTCAAA TGCGCGCGCT TTCTGGTGTT AAAAACCCAG ATGGCCCTGC AGACCCAATT
ATTTGTCACC CCGATGTACG CAGAATGTTG CTAACGCAAA AAGCGTTTGC CGAAGGCGGC
AGAATGCTTA TCTATTTCTT GGCTAAACAA GTCGATATAG AAAGCCATGC TCAAAATGAA
GCAGATAAAG CCGCAGCTTC CGATATGTTG GCATTACTTA CGCCTATAGC GAAGGCGTTT
TTAACAGAAA CGGGCTTTGA GTCGGCTAAC TTGGCAGTAC AGTGCTTTGG CGGTCATGGT
TATATTCGTG AATGGGGTGC TGAGCAAAAC GTACGTGACG CGCGTATCTC CATGCTGTAC
GAAGGTACGA CGGGAATTCA AGCGCTCGAT TTATTAGGCC GTAAGGTGCT TATGAGTCAG
GGTGAGGTAT TGCGCAAGTT CACCAAAGTT ATTCATAAGT TTTGTGAAGC CAATAAAGAT
AACGCCGCCA TCAGTGAGTT TGTTGAGCCT CTAGCCCAAC TAAATAAAGA GTGGGGCGAT
GTGACAATGC ATATCGGTTT GGCAGCCATG GAAAACCCCG AAGAAGTGGG CGCCGCCTCT
GTCGATTACT TAATGTATTC GGGCTATATC ACTCTCGCTT ATTTTTGGGC TCAGGCGGCG
CTTGTTGCGT CTGCCAACCT TGAATCTAGC GAGAAAGATT ACTACGCGAG TAAAATAAAA
ACTGCTCGTT TTTACTATCA AAGATTGTTG CCACGCACCC AGTCGCTGGT TACCACTATG
AAGTCTGGTG CCGCGAATTT ACTCGACTTG ACGCTAGAAG AGTTCTAA
|
|---|
| Protein sequence | MSDYKAPIRD IKFVMYELMG FEEHYQTMPN GEDASQDVVE AILEESAKFC ENVLAPLNSV
GDEQGCTWND GVVTTPDGFK AAYEQFVEAG WPSMTHHTEY GGQGLPESLG TVLSEMTGTS
NWAWCMYPGL SHGAMKTLEL HGTEEQKSTY LTKLVEGAWT GTMCLTEAHC GTDLGMLRTK
AEQNEDGSYS ISGTKIFISA GEHDLAENIV HIVLARLPGA PEGTKGISLF IVPKFLPSDD
GSVGERNQVA CGSLEEKMGI HGNATCVMNF DGAKGYLIGP PNKGLNCMFT FMNTARLGTA
LQGLAHAELG YQKSLAYAKD RIQMRALSGV KNPDGPADPI ICHPDVRRML LTQKAFAEGG
RMLIYFLAKQ VDIESHAQNE ADKAAASDML ALLTPIAKAF LTETGFESAN LAVQCFGGHG
YIREWGAEQN VRDARISMLY EGTTGIQALD LLGRKVLMSQ GEVLRKFTKV IHKFCEANKD
NAAISEFVEP LAQLNKEWGD VTMHIGLAAM ENPEEVGAAS VDYLMYSGYI TLAYFWAQAA
LVASANLESS EKDYYASKIK TARFYYQRLL PRTQSLVTTM KSGAANLLDL TLEEF
|
|---|
| |