| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1881 |
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| Symbol | |
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| ID | 3966926 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 2374707 |
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| End bp | 2376731 |
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| Gene Length | 2025 bp |
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| Protein Length | 674 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637920966 |
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| Product | DNA ligase (NAD+) |
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| Protein accession | YP_527353 |
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| Protein GI | 90021526 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.605724 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGCGT CAGACGCAGT TTTAGACAAG CTAGAAAGCC TTAAAAACCA AATAAATTAT
CATAATAAAT TGTATTATGT GTTGGATGCC CCTGAGCTGC CAGACGCCGA ATACGATAAG
TTGTTTCAAG AGCTTCAAGC CATTGAGCAA CAATTTCCTG AATTAGTTAC CGAAGACTCC
CCAACCCAGC GTGTTGGGGC CGCACCGCTA GACTCTTTTG CTAGTATCGA GCATAAGCGC
CCAATGTTAT CACTCGACAA CGTATTTAAC GTTGAAGAGC TGTTTGCATT CGACAAGCGT
ATAAGAGACA GAATAAATGC CGATGCATCC CTAGAATATT CCTGTGAACC GAAATTCGAC
GGTATTGCTG CGAGCTTGCT TTACGAAAAC GGCCGCTTAA AAACTGCCGC AACCCGAGGC
GATGGAACGG TTGGTGAAGA TATTACCCAA AACATGAGAA CAATCGGTTC CGTGCCGCTT
AAGCTTGAAG GTAATAATAT TCCAGCAGTG CTAGAGGTGC GCGGTGAAGT TTATATGCCC
AAGGCCGGTT TTCTGCGAAT AAACGAAGAG GCTTTAGCGA AAAACGAAAA GACATTTGTT
AACCCACGCA ATGCGGCAGC AGGTAGCTTG CGGCAATTGA ACCCACAAAT AACCGCTAAG
CGCCCTTTGG TATTTTGCGC TTATAACGTC GGGGTTGTTG AAGGCGGGGA GTTGCCAGCC
ACTCATTACG AAACCTTAAC ACAGCTTTTT GAGTGGGGCT TTCTAGTAAG CGAAGAGCGT
CGTATCGCCA AAGGTATAGA AGAGTGCGAA GCTTACTATC ATTACTTAGA GGCTAAGCGC
GAAAGCTTGG CTTACGATAT CGACGGCATA GTATTTAAAG TAAACGCATT CGATCTGCAG
GAGCGGTTGG GCTTTGTTTC ACGTGCTCCT CGTTGGGCTA TAGCGCATAA ATTTCCTGCG
CAAGAAGCGC TAACTGTATT GCACGATGTA GAGTTCCAAG TGGGCAGAAC CGGCGCTATT
ACGCCTGTTG CAAAACTACA GCCTATTTTT GTTGGCGGCG TTACGGTGTC CAACGCGACT
TTGCATAACA AAGATGAAAT AGAACGGTTG GGAATACGCG TTGGCGATAC AGTTATTGTG
CGTCGAGCGG GTGATGTGAT TCCACAAATT GTGTCGATTG TAGAGTCCAA ACGACCGCAG
GATGCTCGAG AAATTAAATT TCCAACGGCA TGCCCAGTAT GTGGTTCAGA TGTCGAGTCT
GTAGAGGGCG AGGCCGCAAT TAGGTGTACC GGTGGCTTGG TGTGTGAAGC GCAGCGCAAA
GAATCCATAA AGCATTTTGC TAGCCGCCAA GCGATGGATA TAGATGGCTT GGGCGATAAA
ATCGTCGACC AGCTTGTCGA CAATAAATTA GTTAATGATG TGGCTGATTT ATACACACTC
GATATACCAA CACTTGCCGG TCTAGAGCGT TTGGGCGCAA AATCTGCGGC TAATTTAGTG
GCCGCTATAG AAGCAAGCAA ACAAACATCG CTAGATAAAA TATTGTATGC CTTAGGTATT
AGAGAGGTTG GTAGGGCCAC TGCGCGCAAC CTTGCTAACC ATTTTTGCAC ACTCAATAAG
GTAATGGATG CTACGCAAGA GCAGCTTATA GAAGTGACCG ATGTAGGCCC GGTAGTTGCG
CACTATGTGG TCGATTTCTT TGCGCAGGCT AACAACCGAG AAGTGATTGA AAAGTTGATT
GCCGCTGGCG TAAATTGGCC GGATATAGAA AAGGTTGATG GTGTAAAACC GCTGGAAGGC
ACCACTTATG TATTGACTGG TTCGCTGGAG AGCTTGTCGC GAGACGAAGC TAAAGACAAG
CTTCAGGCCT TGGGTGCAAA GGTGTCTGGC AGTGTATCGG CAAAAACCAC TTGTGTGGTG
GCAGGCCCTG GGGCAGGGTC AAAATTGGCT AAAGCCGAAA AGCTAGGCTT GGCTATATTG
GATGAAGTAG GTTTACTCGC TCTACTCGAA GAGCACGGAG TCTAA
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| Protein sequence | MAASDAVLDK LESLKNQINY HNKLYYVLDA PELPDAEYDK LFQELQAIEQ QFPELVTEDS
PTQRVGAAPL DSFASIEHKR PMLSLDNVFN VEELFAFDKR IRDRINADAS LEYSCEPKFD
GIAASLLYEN GRLKTAATRG DGTVGEDITQ NMRTIGSVPL KLEGNNIPAV LEVRGEVYMP
KAGFLRINEE ALAKNEKTFV NPRNAAAGSL RQLNPQITAK RPLVFCAYNV GVVEGGELPA
THYETLTQLF EWGFLVSEER RIAKGIEECE AYYHYLEAKR ESLAYDIDGI VFKVNAFDLQ
ERLGFVSRAP RWAIAHKFPA QEALTVLHDV EFQVGRTGAI TPVAKLQPIF VGGVTVSNAT
LHNKDEIERL GIRVGDTVIV RRAGDVIPQI VSIVESKRPQ DAREIKFPTA CPVCGSDVES
VEGEAAIRCT GGLVCEAQRK ESIKHFASRQ AMDIDGLGDK IVDQLVDNKL VNDVADLYTL
DIPTLAGLER LGAKSAANLV AAIEASKQTS LDKILYALGI REVGRATARN LANHFCTLNK
VMDATQEQLI EVTDVGPVVA HYVVDFFAQA NNREVIEKLI AAGVNWPDIE KVDGVKPLEG
TTYVLTGSLE SLSRDEAKDK LQALGAKVSG SVSAKTTCVV AGPGAGSKLA KAEKLGLAIL
DEVGLLALLE EHGV
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