Gene Sde_1872 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1872 
Symbol 
ID3966915 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp2362811 
End bp2363353 
Gene Length543 bp 
Protein Length180 aa 
Translation table11 
GC content47% 
IMG OID637920955 
Productheat shock protein DnaJ-like 
Protein accessionYP_527344 
Protein GI90021517 
COG category[C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0526] Thiol-disulfide isomerase and thioredoxins 
TIGRFAM ID[TIGR00385] periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value0.506662 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGCGTT TAAAGCTTTT TATCCCTGTT TTTGTGTTTG CTTTTTTGGC CGTGGTGCTT 
ATGTATGCGC TTATTCGTGG CGATACCGGT CATGTGGAGT CGGCGCTGCT GGATAAACCT
GTACCTGAAT TTACTATGCC CTCACTGTTT GACGAAAAGC CAGCTGTGTC GGGCGAGGAA
ATTAAAGGTA AGCCCTACTT GCTAAACCTT TGGGGAACAT GGTGTGCGCC GTGTAAGAAA
GAGCATCCAG AGTTGGTGGC ACTATCTAAA AAAGGCGTTC GTATTATTGG TGTTAACCAT
AAGGACGATA AAGAGCTCGC GTTAAAGTGG CTTGAAGAGC ACCAAGACCC GTACGAAGCA
GTTATCTTCG ATGATACCGG TCGTTTTGGC TTAGATTTAG GTATTACGGG GCTACCAGAA
ACATTTTTTG TGGATGCTGA CGGCGTTATT CGCTATAAGC ATACCGGACC AATATCTGAA
TACATTTGGA ACACTAAACT TGCCAGTCAA TGGCAGGCGC TACAGGCGCC GGCGGCTAAC
TAG
 
Protein sequence
MERLKLFIPV FVFAFLAVVL MYALIRGDTG HVESALLDKP VPEFTMPSLF DEKPAVSGEE 
IKGKPYLLNL WGTWCAPCKK EHPELVALSK KGVRIIGVNH KDDKELALKW LEEHQDPYEA
VIFDDTGRFG LDLGITGLPE TFFVDADGVI RYKHTGPISE YIWNTKLASQ WQALQAPAAN