| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1796 |
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| Symbol | |
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| ID | 3966741 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2286400 |
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| End bp | 2289861 |
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| Gene Length | 3462 bp |
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| Protein Length | 1153 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637920879 |
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| Product | transcription-repair coupling protein Mfd |
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| Protein accession | YP_527268 |
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| Protein GI | 90021441 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.46752 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAAGTA ATATGCCCTT ACCCCTACCC TCCAAGCTTG GCGATAAAAA AACTTGGGGA
GGCGTTTCCG GTCTTGCACG TGTTTTTGCT TGCGCAGAAG CTGCGGCACA ACACAACGGA
ACAACTGTCA TTATTGTGCA AAGCATGACA GAGGCCGACC GGTTTGCACG CGACTTGATG
CTTTTAACCA AAGGCAAAAA AAACACCCCC GAAGTTTTGC AATTCGCAGA CTGGGAAACA
CTGCCCTACG ATAATTTTTC ACCGCACCAA GATATTATTT CCGACAGGAT GCGCTGCCTG
TATCAATTAT CGAACCAAGC GCAAGCCATT GTAGTTGTGG CCGCCTCAAC ACTAATGCAA
AGACTGGCAC CGGCCAATTA CATAATTGCC AACAGCTTAG TGGTTGAAAA AAACGAAACC
ATTAACCGAG ACAATTTGTT AACCAGTTTG ATAAATGCTG GGTACCAGCG CGTAGACACC
GTATTCAATC ATGGTGAATT TGCCATTCGC GGCGCGCTTC TCGATATATT CCCCATGGGC
AGCTCGGCCG CTTACAGAAT AGAACTATTT GATGACGAGG TCGACTCAAT ACGCACATTC
GACCCAGAAA CGCAACGCAC CGTAGATCAA GTAAGCAAAA TTGAATTACT ACCCGGCAAA
GAGTGCCAAC TCGATGCAGA AGGCATAAGC CGCTTTAAAT TAAATTGGTA TGAAAACTTT
AATGTAGATC ACCGCGAATG CCCAGTTTTT CAAGATGTAA GCTCTGGCAT ATCGCCAGCG
GGTATTGAGT ATTACCTGCC TTTATTTTTT GAGCAAACAG CAAGCCTGTT CGACTACCTG
CACGAGAATA CACTCGTTAT GGTAACCAAA GGCTTCGAAA CCGCCGTAGA AGATTTTTGG
CGCGATGCCT CTAGCCGTTT TGAAAGCCAC AATATCGACA TGCGTCGCCC TCTTCTGCCG
CCCGCTAAAG TTTTTCATTC AGTTAGTGAA ATATACAGCC AGCTTAAACG CTTTCAACGC
GTGGTGTTAG AACCTACACA GGTAGAAGAA CGTAGCGGCA GCGCAAACAT AAAGACCCTT
AGTACGCCCA ATTTAAATAT TGATGCTAAA GCCCAAAACC CGTTATATAA GCTTGAAGAG
TTTATCTATA GTTACGACGG CCGCATCTTA TTTTGCGCCG AAAGTAACGG GCGACGCGAA
ACATTAAAAG AACACTTCAA AAAAATAGAC CTGCAACCCG AAGATGTGGC TTCGACAGAT
GCATTTTTAC AAGGCAAATC GTCTATAGCT ATTTGCGTTG CCGACTTCCA AGAAGGTTTG
CATCTTAAAA CCCCCAATAT TTGCATTATT GCTGAATCAC AACTTTTTGG TCAGCGCGTA
CAGCAGTATC GACGCCGCAA AGAATCGAAT ACCGATTTCA ACGAAAACAT TGTTAAAAAC
CTTACCGAGC TAAAAATCGG TGCCCCAGTC GTACATATTG AACACGGGGT TGGTCGCTAC
TTAGGCCTAC AAACCATAGA GTTCGACGGT CAAAAAGATG AATTTTTAGT ACTCGAGTAC
GCCAACGAAG CCAAGCTCTA TGTACCCGTT GCCAACCTGC ATTTTATTAG CCGCTATAGC
GGCGCTGAAG ATAGCAGCGC ACCACTCAAC CGACTGGGTA GTGATCAATG GCAAAAAGCG
AAACGTAAAG CCGCCGAAAA ACTGCGCGAT GTTGCCGCTG AACTTTTAGA AATTTACGCT
AAGCGCCAAG CCAGAGAAGG CTTTCAATAC ACTTACCCAA AAGACGCTTA CGAAATATTT
GCTGAAAGCT TCCCCTTTGA AGAGACGGTT GATCAGCAGC AAGCTATTGA TGCCGTAAGG
CAAGATATGA TTTCGGCCCA GCCTATGGAT AGGCTTGTGT GTGGCGACGT GGGCTTTGGT
AAAACAGAAG TGGCCATGCG CGCGGCATTT ATTGCAGTAC AAAACAGTAA GCAAGTTGCC
GTGTTGGTAC CCACCACCCT GCTCGCCCAG CAGCATTACG AAAACTTTAA AGATCGCTTT
GCGGATTGGC CGGTCAACGT AGAGGTTATT TCTCGCTTTA AAAGCAGCAA AGACATAAGC
GAAATACAGA AAAAATTAGA AGCGGGCAAA GTCGATATAT TAATTGGTAC ACATAAGCTA
ATCCAGGGCG AATTAATTTT CCCAAATCTT GGTCTGTTAA TTATTGATGA AGAGCACCGC
TTTGGCGTTA GACAAAAAGA AGCATTAAAA GCACTGCGCA CAGAAGTAGA TATACTAACG
CTTACAGCAA CGCCCATTCC ACGAACGCTA AACATGGCCA TGTCGGGCAT CCGTGATCTA
TCTATTATCG CCACACCACC GGCCAAACGC CTGTCGGTAA AAACGTTTGT TCGTCAATCC
GATAACGCCG TTATAAAAGA AGCTATTTTG CGCGAGATTA TGCGCGGTGG TCAGCTGTAC
TACCTACATA ATGAAGTAAG CACCATAGAA AAAACCGCAG CAGACTTACA AGAACTTGTC
CCCGAGGCAC GCATCCGAGT GGCACATGGG CAAATGCGTG AGCGCGAGCT AGAAGCAGCA
ATGTCTGACT TCTACCACAA GCGCCATAAT ATTTTAGTAT GTACCACTAT TATAGAAACG
GGCATCGACA TTCCCAGTGC GAACACTATT ATTATTGACC GCGCCGATAA ATTTGGCCTA
GCTCAACTGC ATCAGTTGCG TGGGCGCGTT GGTCGATCAC ACCACCAAGC ATATGCCTAC
TTACTGACTC CACACAAAAA AGCAATGACC GCCGATGCGG TAAAACGCCT AGAAGCAATT
GCCGAAGCAC AAGACCTAGG CGCTGGTTTT ACCCTTGCTT CTCACGACCT TGAAATTCGC
GGCGCAGGTG AATTATTGGG CGATGAACAA AGCGGTCAAA TGCAAGCCAT TGGCTTTTCG
CTTTACATGG AAATGCTAGA CAAAGCCGTA GAAGCACTGA AAAGCGGTAA AGAACTGGAT
TTTGAATCAA ACTTTAATAA CAACGTTGAA TTTAATCTGC GCATACCTGC ACTTATTCCC
GATGATTACC TGCCAGACGT ACACACCCGT GTAATTTTGT ACAAACGCAT GGCTTCGGTT
AAAAACGAGA ATGAGCTAAA TGACCTACAG GTAGAGATGA TAGATAGATT TGGGCTGCTA
CCAGACCCAA TTAAAAACCT CGTACGCCAA ACTCGCTTGC GCTTAACTGC GGAACAGCTG
GGCGTTTGCA AGGTCGAAGC TAACAACACA GGCGGTAGAA TAGAGTTCAC CACTAAGCCG
AATATCGACC CACTTACAAT TGTAAAAATG GTTCAAACAA CACCACAGCA TTACAGAATG
GAAGGTGCTA GCCATCTAAA ATTCTTTTTT GATATGGAAT CGGCGGACGA ACGCCTACTA
ACCATTCACA ATATATTCGA AACATTAATG AAGTCGAGCT AA
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| Protein sequence | MTSNMPLPLP SKLGDKKTWG GVSGLARVFA CAEAAAQHNG TTVIIVQSMT EADRFARDLM
LLTKGKKNTP EVLQFADWET LPYDNFSPHQ DIISDRMRCL YQLSNQAQAI VVVAASTLMQ
RLAPANYIIA NSLVVEKNET INRDNLLTSL INAGYQRVDT VFNHGEFAIR GALLDIFPMG
SSAAYRIELF DDEVDSIRTF DPETQRTVDQ VSKIELLPGK ECQLDAEGIS RFKLNWYENF
NVDHRECPVF QDVSSGISPA GIEYYLPLFF EQTASLFDYL HENTLVMVTK GFETAVEDFW
RDASSRFESH NIDMRRPLLP PAKVFHSVSE IYSQLKRFQR VVLEPTQVEE RSGSANIKTL
STPNLNIDAK AQNPLYKLEE FIYSYDGRIL FCAESNGRRE TLKEHFKKID LQPEDVASTD
AFLQGKSSIA ICVADFQEGL HLKTPNICII AESQLFGQRV QQYRRRKESN TDFNENIVKN
LTELKIGAPV VHIEHGVGRY LGLQTIEFDG QKDEFLVLEY ANEAKLYVPV ANLHFISRYS
GAEDSSAPLN RLGSDQWQKA KRKAAEKLRD VAAELLEIYA KRQAREGFQY TYPKDAYEIF
AESFPFEETV DQQQAIDAVR QDMISAQPMD RLVCGDVGFG KTEVAMRAAF IAVQNSKQVA
VLVPTTLLAQ QHYENFKDRF ADWPVNVEVI SRFKSSKDIS EIQKKLEAGK VDILIGTHKL
IQGELIFPNL GLLIIDEEHR FGVRQKEALK ALRTEVDILT LTATPIPRTL NMAMSGIRDL
SIIATPPAKR LSVKTFVRQS DNAVIKEAIL REIMRGGQLY YLHNEVSTIE KTAADLQELV
PEARIRVAHG QMRERELEAA MSDFYHKRHN ILVCTTIIET GIDIPSANTI IIDRADKFGL
AQLHQLRGRV GRSHHQAYAY LLTPHKKAMT ADAVKRLEAI AEAQDLGAGF TLASHDLEIR
GAGELLGDEQ SGQMQAIGFS LYMEMLDKAV EALKSGKELD FESNFNNNVE FNLRIPALIP
DDYLPDVHTR VILYKRMASV KNENELNDLQ VEMIDRFGLL PDPIKNLVRQ TRLRLTAEQL
GVCKVEANNT GGRIEFTTKP NIDPLTIVKM VQTTPQHYRM EGASHLKFFF DMESADERLL
TIHNIFETLM KSS
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