Gene Sde_1789 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1789 
Symbol 
ID3966715 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand+ 
Start bp2280758 
End bp2281390 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content46% 
IMG OID637920872 
ProductTetR family transcriptional regulator 
Protein accessionYP_527261 
Protein GI90021434 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value0.461504 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCAAA ACGAGACGGT TGATCGTATT TTGAACGCCG CTACGATTTT ATTTGCCGAA 
CGAGGCTTCG CGGAGACTTC CCTGCGTACG ATTACTGGCA TGGCAGACGT AAATTTGGCG 
TCGGTAAATT ACCATTTCGG GTCTAAAAAG GAGCTTATTC AAGCGGTTTT TACTCGGTTT 
ATGACTCCGT TTTGTAAAGA ACTAGACCGC AGGCTGGATG ACTATGAGCA TGCTGGGCAG 
CAGTCGCCCA ACCCAGATGT GTTGCTACGG CATCTGTTTG CCGCCTTCAA GGCGGTAACC 
GAAGAGATTA ACGAGCCACC GCAGCGCTTT ATGAAACTGC TTGGTTTGGC TTATTCCCAA 
TCGCAAGAGC ATTTAAGGCT AAGTATTATT GAGCAATTTG GCGGTACCTA TACGCGTTTT 
ACCCACGCGT TAAAAGGCTC CTTGCCCGAA ATGTCGAATG TTACTTTTTA TTGGCGTTTG 
TATTTTATGC TTGGTGCTGC GGTTTTTACG CTTTCTAGTT ACGATTCTAT TCGCGGCATT 
TTAAATGCTG ACTACCACGA AGATACCGCT CTCGATGCGG CCATAGAGCT AATGATTCCA 
TCATTAGTGG GGATGCTAAA TGTTGGAGAC TAA
 
Protein sequence
MAQNETVDRI LNAATILFAE RGFAETSLRT ITGMADVNLA SVNYHFGSKK ELIQAVFTRF 
MTPFCKELDR RLDDYEHAGQ QSPNPDVLLR HLFAAFKAVT EEINEPPQRF MKLLGLAYSQ 
SQEHLRLSII EQFGGTYTRF THALKGSLPE MSNVTFYWRL YFMLGAAVFT LSSYDSIRGI 
LNADYHEDTA LDAAIELMIP SLVGMLNVGD