| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1778 |
|---|
| Symbol | |
|---|
| ID | 3966704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 2268126 |
|---|
| End bp | 2270135 |
|---|
| Gene Length | 2010 bp |
|---|
| Protein Length | 669 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637920861 |
|---|
| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
|---|
| Protein accession | YP_527250 |
|---|
| Protein GI | 90021423 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000000296468 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGCAG TGTTGATGAC AGCAGTGAGT CGTTTACTAA CTAACATTTT ATGCGTATCT
GGCCTCGTTA TTTCTGGCCA CGCCTTTGCC CTAGTTGCAA CGGACGTGAA TGATACACGA
GAACTAGCTT CAAATACGCT ATCTATTACA GATCAGCGCT ATCACTACCA ACTCGCAAAA
ACCTACCTTG CCAAAGACGA TATGGCATTG TTCGAGAAAC ACTATGCACT AGCACAAGGC
TATGCGTTGC TGCCCTACCT CGATTACGCC TTACTAAAGA ACCAATTACA TACGTTGCCC
ACCGCAAAGG TAGACTCGTT TTTAGCAGAA CATAAAGCCA GCTTTTTGAG CAAACGCTTG
GCACAACAAT GGCTTTACAC ACTTGCTATA AAGCAAAAGT GGGACGAGTA TTTACACTAC
TACCAGCCAG GGCTCGGCAT GGTTGAGCTA GAATGCTACA ACCTGTACGC ACGCATCCAA
ACCGGCGACA AAACGGCCTA TAGCGACGTT GCGGGCATTT GGGCAGTAGG CAAATCATTA
CCCGACGCCT GCGACCCGCT TTTCTCCGCG TGGAAAAAAC AAGGCGGCAT TACCGATGCC
GTTGCTTGGA CACGCTTCAC CGAAGCCATG AACAACAATA AGCGCAGTCT TGCGCGCTAT
GTGACCCGCT ACATGAGCAC CGAATACAAA GCTTACGCTG ACCTATTCGA CAAGGTACAC
GGCTACCCTT ACAGCATTCG CACCACCAAG CTATTTCGCG AACAAAGCCA ACCAATGAAC
GACATCATTG CCTACGGTAT AAAACGCTAC GCGCGCTCCA ACCCTAAAGA TGCCGTTAAG
CAGTGGGAGC GCTACGAAGC GCAGCATTTG TTTAGCCAAG AGCAAGCAGT TGATACCAAG
CTGTACCTAG TAAAACGCTT AGCCTATAAG GGCCATAGCG ACTTAGTAGA GAAGTGGATT
AGCCATTCTA ACGAGCTGCG CGATGCAAGC GTTATGGAAG CACTTTTACG CGAGGCGCTT
AAACAGCAAG ATTGGCAAAA AGTTAACCAG TGGGTAAATC TTGCAACACC CGAACTACAA
CAGGAAGAAC GCTGGCTGTA TTGGCGAGCA CGCGCGCAAG ATGAGCTTGG GATTGAAACG
GGGCCAATGG GCACCAGCGC CGATATTTAC CAGCAATTAT CTGGCTCACG CAGCTTTTAC
GGGTTTATAG CCGCCGACGC GACTAAGCAG CCCTACAGCC TGAGACAGCG CAACGACAAT
ATAGACCCCA ATACGCAAAG CCGTGTAGAG CAGCTAAGTG CTATTCAGCG CGCCAAAGAG
CTTTGGCTAA ACGACAGCCT AAGAGAAGCT AATGCAGAGT GGTATTTTGC CTTAGCGCAG
CTGAACGAGG CAGAAATACT TGCCGCTGGC GACCTCGCCC GCAAGTGGGG TTGGCACAAT
CAGGCTATTA AATCTATGAT TTACAGCCAG CAGTGGGATC AGGTTGACAT TCGCTTCCCC
CTTGCCTACC TCGAACAAAT TAACGAAGTA GCCAGCGCAG TAGATTTAGA GCCAACACTT
ATATTTGCAG TGGCAAGGCA AGAAAGCGCT TTTGCCGAAA CTGCTCGCTC CCACAGCGAT
GCACGCGGTT TAATGCAGCT AATGCCTGCA ACAGCGCGTG AAACTGCTCA GAAGTCTGGC
ATTAAGCATT CCACGGCAGA TTTATTTAAA CCAGAACACA ATATTTTGCT AGGTAGCCAC
TATTTAAGCG AGTTACTGCA AAAATATAAC GGCAACCGAA TTCTTGCCGC TGCCGCCTAC
AATGCCGGCC CACACCGCGT TAACCGCTGG TTGCGCGAGC ACGATTCAGG TATTCCATAC
GATATTTGGA TAGAAACTAT TCCGTTTAAA GAAACCCGCG GCTACGTGCA AAACGTTTTA
GCCTTTTCGG TTATCTACGG CTACAGATTG GGCCGCCCAA GCGCTATGTT CAATGAATTT
GAACTGGGCG ACTACAAGCC TATCAACTAA
|
|---|
| Protein sequence | MVAVLMTAVS RLLTNILCVS GLVISGHAFA LVATDVNDTR ELASNTLSIT DQRYHYQLAK
TYLAKDDMAL FEKHYALAQG YALLPYLDYA LLKNQLHTLP TAKVDSFLAE HKASFLSKRL
AQQWLYTLAI KQKWDEYLHY YQPGLGMVEL ECYNLYARIQ TGDKTAYSDV AGIWAVGKSL
PDACDPLFSA WKKQGGITDA VAWTRFTEAM NNNKRSLARY VTRYMSTEYK AYADLFDKVH
GYPYSIRTTK LFREQSQPMN DIIAYGIKRY ARSNPKDAVK QWERYEAQHL FSQEQAVDTK
LYLVKRLAYK GHSDLVEKWI SHSNELRDAS VMEALLREAL KQQDWQKVNQ WVNLATPELQ
QEERWLYWRA RAQDELGIET GPMGTSADIY QQLSGSRSFY GFIAADATKQ PYSLRQRNDN
IDPNTQSRVE QLSAIQRAKE LWLNDSLREA NAEWYFALAQ LNEAEILAAG DLARKWGWHN
QAIKSMIYSQ QWDQVDIRFP LAYLEQINEV ASAVDLEPTL IFAVARQESA FAETARSHSD
ARGLMQLMPA TARETAQKSG IKHSTADLFK PEHNILLGSH YLSELLQKYN GNRILAAAAY
NAGPHRVNRW LREHDSGIPY DIWIETIPFK ETRGYVQNVL AFSVIYGYRL GRPSAMFNEF
ELGDYKPIN
|
|---|
| |