Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1768 |
Symbol | |
ID | 3966674 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 2256588 |
End bp | 2257271 |
Gene Length | 684 bp |
Protein Length | 227 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637920851 |
Product | GntR family transcriptional regulator |
Protein accession | YP_527240 |
Protein GI | 90021413 |
COG category | [K] Transcription |
COG ID | [COG1802] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.000000893003 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCAAAA ATACTAAAAT TAATTACGAC CGCCCCGCTT CAGGCCAAAT ATTCGAATAC CTGCGCGACG CCATCGTAAG CATGGAATTA CGCCCGGGCC AAATGATTGC AGAAACCAGC CTAGCAGAGC AGTTTGGTGT TAGCCGAACC CCCGTTCGTG AAGCGCTAAT TAAATTATCG AACATAGGTT TTGTAGAGGT GTTACCCCAA CGCGGTACAT ATGTAACCAA GTTCAGTACG CAAAAAATTC TCGAGGCTAG GTTTATACGC GAAGCCTTAG AAGTCGCTGT AGCAGCCGAT TTAGCATCTA ACGTTACCGA AGAATTAGTA GAAGCTTGCC AAGCAATTAT TGAAGCGCAA TCCAAAGCTG CCGATGAAGA CGATTCCATC ACCTTTCAAA AGCTCGATGA TGAGTTCCAT CAAATGCTTG CGCAGCACAC ACAGTACGCG CGTGTTGGCA GCTTAATTGA AGCAGAAAAA GCCCATATGG ATAGGGTAAG AAATCTAAGC CTTCAAGAAG CCGGGCAATT TAAACGCGTG CTAGCACAGC ACAAAGCCAT TGTTAAAGCC ATTAAAGCTG GTGACGCCAA CAAAGCCCAA GAGGCTATGT CTACGCATAT GCGCGAGGTA TATAAAATAC TTACAGTTAT ACCTGCCGAG CACCCAGAAT ACTTTATAGA TTAA
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Protein sequence | MIKNTKINYD RPASGQIFEY LRDAIVSMEL RPGQMIAETS LAEQFGVSRT PVREALIKLS NIGFVEVLPQ RGTYVTKFST QKILEARFIR EALEVAVAAD LASNVTEELV EACQAIIEAQ SKAADEDDSI TFQKLDDEFH QMLAQHTQYA RVGSLIEAEK AHMDRVRNLS LQEAGQFKRV LAQHKAIVKA IKAGDANKAQ EAMSTHMREV YKILTVIPAE HPEYFID
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