| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1767 |
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| Symbol | |
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| ID | 3966673 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2254858 |
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| End bp | 2256462 |
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| Gene Length | 1605 bp |
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| Protein Length | 534 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637920850 |
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| Product | NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit |
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| Protein accession | YP_527239 |
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| Protein GI | 90021412 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3534] Alpha-L-arabinofuranosidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0000390302 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCCAG CTTCAACCCT AAGTGTGAAA ACAACTAATA AAACAACAAA CCACCTCAAA
AAAGTTGCCC TTACCGTAGC CGCTATAGTT GCCCCGCTAA CAAGCTGGGC CGATGTGAAA
GTTAGCCTAA ACCCACAAAA CACAGGCGAA ACCATAAGTA AATATATCTA CGGCCAATTC
GCAGAGCACC TTGGCAGCGG CATATACGGC GGCATATGGG TGGGCGAAGA CTCCCCAATA
CCCAACAAAA ACGGCTTTCG TAACGATGTA ATCAAAGCCC TGCAAGAGCT ACAAGTACCT
GTTATAAGAT GGCCCGGTGG CTGCTTTGCC GACGAATATC GCTGGCGTGA TGGCATTGGC
CCACGTGAGC AACGCCCTAT CCGCGTAAAT ACCCACTGGG GCGGTGTGGA AGAACCCAAT
ACCTTTGGTA CTCACGAATT CTTCGAATTA GTTGAGCTAC TTAATACCGA AGCCTATGTG
GCAGGTAACC TAGGCACTGG CTCACCACAA GAAATGGCCG AATGGCTGGA ATATATTGTT
TCCAACTCCA ACTCTACTGT AGTGGCAGAG CGCAAAAAAA ATGGCCGCGA AGAGCCTTGG
GAAGTGGCCT TTTGGGGTGT GGGTAATGAA TCTTGGGGTT GCGGTGGCAA CTTAACGCCC
GAGTACTACA CCAATTTATA TCGTCATTTT TCCACTTTTG TTAAAGCCAC TGGCGCTAAG
CGCCCGAAGT TAGTTGCAAG CGGCTCGTAT GATGATGACG AAACTTGGAC AACGCCACTA
AGTAAGCTCA AAAATAATAT AGATGGTATA AGCCACCACT ACTACACCTT ACCCACCAGC
GACTGGAGCA TAAAAGGTGC GGCTACAGGC TTTGATGAAA AAGAATGGAT TCTTACCCTT
GAGCGCACAT TGAAAATAGA CAGCTACCTT GCAACTCAAA CGGGTATTCT TAAAAAGAAT
AACCCCGAAG GCAATATAGG GTTGTATTTA GATGAATGGG GTACGTGGTA CGATGCAGAG
CCCGGTACAA ACCCCGGCTT TTTATACCAA CAAAATACCG TGCGCGACGC CATAGTAGCA
GCAGTAAACT TAAATATATT CCACAACTAT GCCGACCGCT TACACATGGC GAACATCGCC
CAAATGGTAA ACGTACTACA GGCAATGATA CTGACCGACA ACGAAAAAAT GTTGCTCACA
CCCACGTATC ACGTTTTTAA GATGTACATA CCATTTCAAG ATGCTACCCA TATACCGTTA
GATATAAAAG GCCAGCGCGA CTACAGCGCA CATAAAACTA CCGTACCAGG GTTCTCGGCC
TCGGCAGCTA AAACCCCAAA TGGCAATATT GTAGTTTCAC TTGTTAACCT TAACCCAAAC
GAAGCGGAAG AAGTGAGCAT TGCACTACAA GGCATCAAGG TAAAAACCAT TACTGGTGAA
TTACTTACCA GCCAAAAAAT GGATGCGCAT AACACCTTCG ACAAGCCAAA CAATGTGCAG
CCACGCGCAC TTAACCAAAG CGACTACAGC ATTAGCAAAA ACGGCAAAAC CCTTACCGTT
AAGCTACCCG CTAAAGCCGT AGTTGTTTTA CAGCTTAATA AATAA
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| Protein sequence | MNPASTLSVK TTNKTTNHLK KVALTVAAIV APLTSWADVK VSLNPQNTGE TISKYIYGQF
AEHLGSGIYG GIWVGEDSPI PNKNGFRNDV IKALQELQVP VIRWPGGCFA DEYRWRDGIG
PREQRPIRVN THWGGVEEPN TFGTHEFFEL VELLNTEAYV AGNLGTGSPQ EMAEWLEYIV
SNSNSTVVAE RKKNGREEPW EVAFWGVGNE SWGCGGNLTP EYYTNLYRHF STFVKATGAK
RPKLVASGSY DDDETWTTPL SKLKNNIDGI SHHYYTLPTS DWSIKGAATG FDEKEWILTL
ERTLKIDSYL ATQTGILKKN NPEGNIGLYL DEWGTWYDAE PGTNPGFLYQ QNTVRDAIVA
AVNLNIFHNY ADRLHMANIA QMVNVLQAMI LTDNEKMLLT PTYHVFKMYI PFQDATHIPL
DIKGQRDYSA HKTTVPGFSA SAAKTPNGNI VVSLVNLNPN EAEEVSIALQ GIKVKTITGE
LLTSQKMDAH NTFDKPNNVQ PRALNQSDYS ISKNGKTLTV KLPAKAVVVL QLNK
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