| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1728 |
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| Symbol | |
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| ID | 3966534 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2201071 |
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| End bp | 2202459 |
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| Gene Length | 1389 bp |
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| Protein Length | 462 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637920809 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_527200 |
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| Protein GI | 90021373 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.091875 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATACCG CCGAACTGTT TCGCTGCTTA GTTATTGCCC TCTGTGTGGC AATAGCGGTA
CAAACAATTG GAATAGTTTG GTTTTGGCTA AAGAAGAAAA AAGACAACAC GCTTGCCGGT
GAGCAAATAG CCCCAGAACA ACTCGCCAAA ACAAAAGAAC AGCTCTGGCG AGAGATAGAA
CGACACCAAG CAACCGAAGA CCTCTTGCGC AAAACACAGC GCTACATTCA CAGTGTGGTT
AATTCCATAG ATTCAGTACT GATTGGCGTT ACCCGCGATG GCTACGTTAC CCACTGGAAC
CGCGCCGCAG CAGAAACCAG CGGCTTAAGC GCAGAAATGG TGATGGGCGC TAAAGTGACC
GATGTTTTTC CCAACCTGCC TGTTTCCATT GGCACTGTAG CCACCTGTAT AGATACCGGC
GAGCCATTTA GGCAAGAGAA CGTATCTGTA GGGGAAGCCG CCGAAGAACG TTACCTAGAT
ATAAAAGTCT ACCCTCTTAA AGAATTAGAT AGCTCAAGCC CATCGCCGCA AAACCGCGCG
CTCGCGGGAG CGGTATTGTT GCTGGAAGAT GTAACCTCGC GTGTGCGCGT AGAAAAAATG
ATGGTTCAAA ACGAAAAATT AATGAGTCTC GGAGAGTTAG CCGCCGGCTT GGCCCATGAG
ATAAACAATC CTTTAGCCGT TATATTGAAT AACGTGCAAA ACATCGAACG CAGAGTAAGC
CCTACGTTGC CAGCCAACCA AGAAAAAGCC CTGCAGGCGA ATATAGACTT GAATGCGCTG
GATACATACT GCCGTAGCCG CGATATTTTT CAGCTGTTAG GGGATATTCG CGATGCGGGA
ACACGGGCGG CAGACATAGT AAAAAGCATG CTTGAGTTTT CTCGCACCAC CAATCAAAAA
GCGGCGACAG ACCTAAACAA ATTACTCACC CATTCACTGC AGCTCGCGCA AAATACCTTT
AAGCTTGAAA CGCCAGCAGG CATTGAGCTA CCCGACATCC ATTGTGACTT AGAAGAAAAC
TTACCTTTAA TTTACGCTGC GGCAACCGAG ATTCAGCAAG TTATACTCAA CTTACTGCTC
AATGCTGCGC AAGCTTTTCG ATCGGAAGAA TACGGCGCCC CCCTGCAACC TCAAATCCAC
ATTCAAACCA AACGCTGTGG GGGCTGGGTG GTGATAACCG TGGAAGACAA CGGGCCTGGG
ATGCCAGACA ATGTAAAAAG GCAGATTTTT AACCCGTTTT TTACCACTAA GGAAGTAGGC
AAAGGCACCG GGCTAGGTTT GAGCGTATCT TATTTTATAA TTAAAGAGCA CCACCAAGGT
GAAATTGACG TTGAGTCGGT ACCAGGCGAA GGTACGCGGT TTACCATACG TCTTCCCCTC
GCCTCTTAG
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| Protein sequence | MDTAELFRCL VIALCVAIAV QTIGIVWFWL KKKKDNTLAG EQIAPEQLAK TKEQLWREIE
RHQATEDLLR KTQRYIHSVV NSIDSVLIGV TRDGYVTHWN RAAAETSGLS AEMVMGAKVT
DVFPNLPVSI GTVATCIDTG EPFRQENVSV GEAAEERYLD IKVYPLKELD SSSPSPQNRA
LAGAVLLLED VTSRVRVEKM MVQNEKLMSL GELAAGLAHE INNPLAVILN NVQNIERRVS
PTLPANQEKA LQANIDLNAL DTYCRSRDIF QLLGDIRDAG TRAADIVKSM LEFSRTTNQK
AATDLNKLLT HSLQLAQNTF KLETPAGIEL PDIHCDLEEN LPLIYAAATE IQQVILNLLL
NAAQAFRSEE YGAPLQPQIH IQTKRCGGWV VITVEDNGPG MPDNVKRQIF NPFFTTKEVG
KGTGLGLSVS YFIIKEHHQG EIDVESVPGE GTRFTIRLPL AS
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