| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1722 |
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| Symbol | |
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| ID | 3966528 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 2195465 |
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| End bp | 2196661 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637920803 |
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| Product | ribosomal large subunit pseudouridine synthase B |
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| Protein accession | YP_527194 |
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| Protein GI | 90021367 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.950771 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAAACAA CAGACTCAAG TCCGCAGGAC GAAAAATTAC AGAAAGTATT GGCGCGCGCA
GGCCAAGGCT CGCGCAGAGA AATGGAGCGC GCAATTACTG AAGGGAGAGT GAAGGTAAAC
GGTGTGGTTG CGACGCTTGG CGACCGCGTG ACTGAGTCAG ATAAGATTCA GGTTGACGAC
CAATATATAC GAGTGAAAAA GGGCGAGGCC GACACAACAC GGGTTATTTT ATACAACAAA
CCAGAAGGCC AAATTTGTTC GCGCAACGAC CCAGAGGGCA GGCCAACGGT ATACGATAAT
TTACCCCGCT TAAAAAGTGG GCGCTGGATT TCGGTTGGTC GTCTAGATTT CAATACCAGT
GGCTTGCTGC TGTTTACCAA CGATGGCGAA CTAGCTCATA AGCTGATGCA CCCAAGCAGT
AATATCGATA GAGAATACTT GGTGCGAGTG CAGGGCGAAG TGGATGGCGA TATGCTGCAG
CGTTTGCGCG ATGGTGTATT GCTAGAAGAT GGTCTGGCCA AATTTACCGA TATTGTACCG
GGTGCCCAAG AGGGTAGTAA CCGCTGGTTC TATTGCGTTG TAATGGAAGG TAAAAACAGA
GAAGTGCGCC GCCTGTGGGA GTCGCAGGAG TGCCGTGTAA GCCGCCTAAA GCGTGTGCGT
TATGGCAACA TATTTATTCC ATCCAATGTG CGTGTAGGGC AATGGATTGA GCTAGAAGAT
AAAGAGCTAA AAGAGCTGTG CCAAACTGCA GATATTCCCG TGCCAGATCG CAAGTTTTCT
GCGGGTTTAC AAGATTTTAG AGATCGTCAG CGCCGCCGCT TGGAATCCCC AGGCTCTAAG
CGCAGTAGTA GGCCAAACAC TAAGGTGCCT GATGCTCGAT CTAGGCCTTC TTCAGCCCAT
TTTGACCCTG AAGTAACAGT AGGCAAAGCT GCTACACCTA ACGCACCTAA GGCAAGGATG
AATACGCGAA GCGCGCCAAA TTTTGATAAT GGCAGTGATA CGCGTCAGCC TAAGCCGCGC
CAACAAGCTT CGAAAAAAAC GAATTCTCGC AATAAAGATA GACGGGATGA ATTTGATGTA
TTCACAGGTG AGCTAGGCAC CAACCGCCGG TCTGATAAGG CAAAGCCAAG CGCTAATCGC
GGTGATAAAC CGGGTAAAGG GCCTGCAGGA GGAAGGGGCT CGAAGCCCCG TCGTTAG
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| Protein sequence | MKTTDSSPQD EKLQKVLARA GQGSRREMER AITEGRVKVN GVVATLGDRV TESDKIQVDD
QYIRVKKGEA DTTRVILYNK PEGQICSRND PEGRPTVYDN LPRLKSGRWI SVGRLDFNTS
GLLLFTNDGE LAHKLMHPSS NIDREYLVRV QGEVDGDMLQ RLRDGVLLED GLAKFTDIVP
GAQEGSNRWF YCVVMEGKNR EVRRLWESQE CRVSRLKRVR YGNIFIPSNV RVGQWIELED
KELKELCQTA DIPVPDRKFS AGLQDFRDRQ RRRLESPGSK RSSRPNTKVP DARSRPSSAH
FDPEVTVGKA ATPNAPKARM NTRSAPNFDN GSDTRQPKPR QQASKKTNSR NKDRRDEFDV
FTGELGTNRR SDKAKPSANR GDKPGKGPAG GRGSKPRR
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