Gene Sde_1721 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1721 
Symbol 
ID3966527 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp2194316 
End bp2195374 
Gene Length1059 bp 
Protein Length352 aa 
Translation table11 
GC content48% 
IMG OID637920802 
Productcondensin subunit ScpB 
Protein accessionYP_527193 
Protein GI90021366 
COG category[K] Transcription 
COG ID[COG1386] Predicted transcriptional regulator containing the HTH domain 
TIGRFAM ID[TIGR00281] segregation and condensation protein B 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.862733 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGAAG AAAACATACA GCTACAAAAT ATTATCGAAG GGGCTATTTT GGCCGCTGGC 
GAAGCTCTTA GTATCGATAG AATACTGAGC CTGTTCGATG AAAACGAGCA GCCAGAAAAA
GACGACATCA AACAAGCTTT GTTGGCAATA CAAGAAAAGA ACGCAGGTCG TGGCTTCGAG
CTCGTAGAGG TTGCTAGCGG TTGGCGTTTT CAGGTGGTTG AAGATATCGC CATGTGGGTG
AATAGATTGT GGGATGAAAA GCCGCAAAAA TATTCACGTG CGCTACTAGA AACCCTTGCG
TTGGTCGCAT ACAGGCAGCC AATTACCCGT GGTGACATTG AAGATGTGCG CGGTGTGGCT
GTGAGCTCTC ATATTATTAA AACCTTGGTA GAGCGGGAAT GGGTGAAGGT AGTAGGACAT
CGCGACGTGC CTGGTCGACC TGCGTTGTAC GCAACTACTA GGCAATTCTT AGACTACTTC
AACTTAAAAA GTTTGGATGA ACTACCCACG CTTGGCGAAC TTAAAGATAT TGACGGTTTA
AATGAAGATT TAGCCTTCGA AGAGGCCGTT GAAGCGAGCA AGACTGAAGA TTTAGCCGAA
AGCGATGCAC AGGAGCAAGC TGCCGACGAA GCGCAACAAG CCGCTGCTGG CGAAGCTCCA
GTAGCTGAAA ATCCCGAGAC AACTGCTGAG AAAGGCGCAG CTGACGAAGC CGCAGTAGAG
TCTGAGACCT TAAGTGACGA TTCAATGGAT GATGAATTGG CTGAGGCAGA TACTGACGCT
GGCATTGAAA ACGAAAATGA AACTGACGGC TCTGAAACCA GTGAATTGGA GCAAGATCAG
GAACAAGTAG CGTCGGCTGC TGCCGAAGAG CATGATGCAG CGGAAGAGAC AGAACAGCTT
GACGACGCAG ATACAGACTC GGCAGCGTCG GATGATATTG ACGAAGATGA AACGTTAGCA
GAACAAGATT TAAACACTTC TGAGGAAGCC GACGCGCCAG CCAGTGAGCT TGACGAATCT
CAAACGCTAG AAGAGACATC AGAAGAAAAA CTCGACTAA
 
Protein sequence
MSEENIQLQN IIEGAILAAG EALSIDRILS LFDENEQPEK DDIKQALLAI QEKNAGRGFE 
LVEVASGWRF QVVEDIAMWV NRLWDEKPQK YSRALLETLA LVAYRQPITR GDIEDVRGVA
VSSHIIKTLV EREWVKVVGH RDVPGRPALY ATTRQFLDYF NLKSLDELPT LGELKDIDGL
NEDLAFEEAV EASKTEDLAE SDAQEQAADE AQQAAAGEAP VAENPETTAE KGAADEAAVE
SETLSDDSMD DELAEADTDA GIENENETDG SETSELEQDQ EQVASAAAEE HDAAEETEQL
DDADTDSAAS DDIDEDETLA EQDLNTSEEA DAPASELDES QTLEETSEEK LD