| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1683 |
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| Symbol | |
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| ID | 3966470 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2150854 |
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| End bp | 2151495 |
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| Gene Length | 642 bp |
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| Protein Length | 213 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637920764 |
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| Product | ribosomal large subunit pseudouridine synthase E |
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| Protein accession | YP_527155 |
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| Protein GI | 90021328 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.000674605 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCATCAC TGCTTCTTAT CAATAAACCT TACAATACCC TCTGCCAATT TACCGATGGA
GAAGGCCGCA ACACCCTTGC CAACTTGCTA CCAGATGGAA AGTATAAAGA TTACTACCCC
GCAGGCAGGT TAGATCTAGA TTCAGAAGGT TTACTCATTC TTACTAACAA TGGCAGCCTC
CAACACAGGA TTAGCCACCC CAGCCAAAAA CTCGAAAAAA CCTATTGGGT GCAGGTTGAA
GGTGACATTA CCCAAGAAGC AATAGCGCAA TTAGAAGCGG GCGTAGAACT TAAAGACGGC
AAAACCAAAC CAGCTAAAGC AAAAAAAATT GCACCACCGC AAAACTTGTG GGAGCGCAAC
CCACCTGTGC GCGAACGAAA AAACATTCCC ACAAGCTGGC TACGCCTAAC TATTAGCGAA
GGAAAAAACC GTCAAGTACG CAGAATGACA GCTGCTGTAA ACTACCCAAC TTTGCGCTTG
ATTCGAGCAG CAATAGGCCC GTGGCAATTA GACAACCTAG CACCAGGCAG CTACAAAGAA
GAAACTGTTC ACCTCGCCCC TCCTAAGCAA AAACCTCGCA CCAGCACGGG GAATTACAAA
AAAAGAACCA CTAAGCCAAC TAACAAACCT AACAAGCGAT AA
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| Protein sequence | MASLLLINKP YNTLCQFTDG EGRNTLANLL PDGKYKDYYP AGRLDLDSEG LLILTNNGSL
QHRISHPSQK LEKTYWVQVE GDITQEAIAQ LEAGVELKDG KTKPAKAKKI APPQNLWERN
PPVRERKNIP TSWLRLTISE GKNRQVRRMT AAVNYPTLRL IRAAIGPWQL DNLAPGSYKE
ETVHLAPPKQ KPRTSTGNYK KRTTKPTNKP NKR
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