| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1680 |
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| Symbol | |
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| ID | 3966467 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 2147280 |
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| End bp | 2149904 |
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| Gene Length | 2625 bp |
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| Protein Length | 874 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637920761 |
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| Product | ATP-dependent helicase HepA |
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| Protein accession | YP_527152 |
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| Protein GI | 90021325 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0454688 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGATT TTGTACAGGG CCAGCGTTGG GTTGTAGATT CCGAGCCTGA GCTAGGTTTG
GGTATGGTAG TGGGAATGGA TGAGCGCACT GTCACGATTC TTTTCCCTGA AGTAGATACA
GAAAGACGAT ATAACGCACA GCAAGCTCCG CTTACACGAA TTCAGTTTGA AGTGGGTGAT
GAAATTCAGC CACGCGAAGG TGAGCCTCAA ATAGTGGCCA CCGTGCACGA ACAAAATGGT
GTGCTCGTAT ACGAAACACA AAACGGTCAG CTAGTTGTTG AAACAATGCT CGCCGGTAGC
ATTCGCCTTA ATCAGCCTTA TATGCGTTTG ATTACAGGTC AACTCGATAA GCCAAACTGG
TTTCACTTCC GTCGTAAATT CGACAACGCC ATGACCAAAG CTTGGTGCTC TGGTTTAAAA
GGTTATCTCG GTGTTCGCGC CAACTTAATT CCACATCAAC TATATGTAGC CACCTCGGCT
TGTAACCGCG AACGCGTGCG TGTGTTGTTG GCGGATGAAG TGGGTTTGGG TAAAACCCTT
GAAGCAGGCC TAATTTTAAG TCGCCTATTA AAGCTTGAGC GCGTATCGCG CGCGTTAATC
ATTGTGCCAG ATACATTACA AGTGCAATGG TTGGTAGAGC TGGTGCGCAA GTTTAGTTTG
TATCCTTCTT TATACGATGG GGAAGGCTAC GATTTTGGCA ATGCGGGTGT ACACATTGTG
CCGCACTCAG TGCTTATTAC CGAGCAAGAA AATTTGCTAA GCCACGATTT TGATATTGCC
ATTGTGGATG AGGCGCACCA CATAAGCATG GAAAGCGAAG GCTTTGCTGT GCTTAAAATG
CTTTCCACTT TGTTGAACCA CCTTATTTTG CTTACGGCAA CGCCCGAGCA GTTGGGAGCA
GAAAGTCATT TCGCGCGCTT GCAGTTGCTG GATGCCGCTA AGTTTACCGA TTTTGATTCG
TTTATTTCGC AAGAAAATAC TTACGCAGAG CTAAGTAAAC GTATTCAAGA TTTACCTGCT
GGCAAAGATC AGTTGGTTGC CGATTTAGGC TTAGAGCCGG GCGATGATGA ATTTGTTATC
AAACAGCTGT TAGATCAGCA CGGTGTTGGC CGTGTCATGT TCCGCAATGC ACGCAAAGCG
GTTGCTGGGT TTCCTGCACG TATTTGCTTG CCTCATCAGT TGGAAGAGGA TGGCTGGGAT
AGCAAGTTCG AATGGCTTGC GCAGTGGTTA AAGGCTAACC CCAAGCAGAA AGCGCTCGTT
ATTTGCCATA CAGCGGATAC CGTTAAAGAG TGTGAGCTGT ATTTATGGGA AAAGCACGGC
ATTGATGTTG CCGTATTTTA TGAAGAGCAA ACGCTCATAG AGCGAGATAA ATCTGCAGCT
TACTTTGCCG ACGAAGAGCG CGGGGCACGC ATCCTTTTGT GTTCAGAAAT TGGTAGTGAG
GGCCGTAACT TTCAGTTTAG TAGCCATCTA ATATGTTTGG ATTTGCCCGA TCACCCAGAG
TTGTTAGAGC AGCGCATTGG TCGCTTGGAT CGTATAGGCC AGAAGAACGA TGTGTCTGTG
CATGTTCCAT GTCACCCAGA AAGTGACACG GCAAAGCAAT TGTTTTGGTA TAACGATATT
TTAAACTGTG TGGAGCAACA AAACCCAGCT TCTACAGCCA TTCACGATAA GTACTGGCAG
CAAGATTCTC TAAGCTGGGG GAGTGCCGAC TTAGCAGAAA TTAGAGAAGA GTTAGCACAA
TTGCAGCTTA AAATTGTAGA GGGTCGCGAC GCTTTACTAG AGCTAAATAG TTGCCGACAA
CCCTTTGCCG ATCAGTTAGC CCAGTCTATT GCCGATTTTG AACAAGCTAC ACCCGAAGAA
TTGGTGAGCG AGGCAAGTGA GTTACTTCAA TTTCACTACG AGCAAACTTT CGACGGCATT
TTTAGCTTAA TACCTTCCGA TAAAATGCTA ATTCCTGCTT TACCTGGGTT GCCCGCAGAA
GGTGTAGAGT TAACTTACGA TCGCGACATT GCCAATAGTC GCGAAGACCT GCACTTTTTA
ACGTGGGATT CACCGTTTAT TGAAGGGTTG TGGGAGCTGT TGCATCACTC GGAGTTAGGT
TCTGCTTCTG TCGCTATGTT GCCAAGTCGA CAATTGCCAG CGGGGCACTG TTTGTTAGAG
GTGTGCTTCG ACTTTATGAT TCAGTCGCCA GCTGCAAAAG AGTGTTTGCC GTTTATACAA
GAAAGCAGTG TGCGCAGTTT AGTGTTAGAT GTTGGTGAAA ATGATTTGTC TGGTATTTTG
CCTGAGTCTG CTCTTGAGGC GAACTTGCAG GGTGTGAAAA AACACTTGGC GAGAGAGGTT
ATAAAGTCGC GTAAAGAGGC TATACCTCAG TGGTTTAAAA AGGCCGAAGA TATTTCTGTA
GCCAAAAAGT CTGCAGTGCA AGCGGCTGCT ACCGAAAGAG CGCAAAGCTT TTTTGAAGGC
GAAATAAAGC GTTTAAAAAC GCTAAAGGCG AAGAACCCGC TAATTGACGA TGCCGAAATA
GCGCTGTTAG AGGTAAAAAG CCAAGCGGTG CAGCATGCAA TTAACCACGC TGCTCACCTT
CAGTTGTCGG CCATTCGTTT AATAGTGATT ACTCCTGCGG AGTAA
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| Protein sequence | MTDFVQGQRW VVDSEPELGL GMVVGMDERT VTILFPEVDT ERRYNAQQAP LTRIQFEVGD
EIQPREGEPQ IVATVHEQNG VLVYETQNGQ LVVETMLAGS IRLNQPYMRL ITGQLDKPNW
FHFRRKFDNA MTKAWCSGLK GYLGVRANLI PHQLYVATSA CNRERVRVLL ADEVGLGKTL
EAGLILSRLL KLERVSRALI IVPDTLQVQW LVELVRKFSL YPSLYDGEGY DFGNAGVHIV
PHSVLITEQE NLLSHDFDIA IVDEAHHISM ESEGFAVLKM LSTLLNHLIL LTATPEQLGA
ESHFARLQLL DAAKFTDFDS FISQENTYAE LSKRIQDLPA GKDQLVADLG LEPGDDEFVI
KQLLDQHGVG RVMFRNARKA VAGFPARICL PHQLEEDGWD SKFEWLAQWL KANPKQKALV
ICHTADTVKE CELYLWEKHG IDVAVFYEEQ TLIERDKSAA YFADEERGAR ILLCSEIGSE
GRNFQFSSHL ICLDLPDHPE LLEQRIGRLD RIGQKNDVSV HVPCHPESDT AKQLFWYNDI
LNCVEQQNPA STAIHDKYWQ QDSLSWGSAD LAEIREELAQ LQLKIVEGRD ALLELNSCRQ
PFADQLAQSI ADFEQATPEE LVSEASELLQ FHYEQTFDGI FSLIPSDKML IPALPGLPAE
GVELTYDRDI ANSREDLHFL TWDSPFIEGL WELLHHSELG SASVAMLPSR QLPAGHCLLE
VCFDFMIQSP AAKECLPFIQ ESSVRSLVLD VGENDLSGIL PESALEANLQ GVKKHLAREV
IKSRKEAIPQ WFKKAEDISV AKKSAVQAAA TERAQSFFEG EIKRLKTLKA KNPLIDDAEI
ALLEVKSQAV QHAINHAAHL QLSAIRLIVI TPAE
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