| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1659 |
|---|
| Symbol | |
|---|
| ID | 3965175 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 2127173 |
|---|
| End bp | 2128156 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637920740 |
|---|
| Product | malate dehydrogenase |
|---|
| Protein accession | YP_527131 |
|---|
| Protein GI | 90021304 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0039] Malate/lactate dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01759] malate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.000000634341 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAAGCAC CCGTTCGTGT TGCCGTTACC GGCGCCGCTG GTCAAATCAG CTACTCTTTG
TTGTTCCGCA TCGCCGCTGG CGAAATGTTG GGCAAAGATC AACCCGTAAT TCTACAAATG
TTAGAAATTA CCCCAGCTTT AGAAGCGCTT AAAGGCGTAG CGATGGAGTT GGATGACTGT
GCTTTCCCGC TTTTGGCTGG AATGGTATGT TCGGACGACC CAAATGTTGC TTTTAAAGAT
GCCGATTACG CATTGCTTGT TGGTGCGCGT CCTCGTGGAC CAGGCATGGA GCGTAAAGAC
CTTCTAGAAG CTAACGCTGC TATTTTCTCT GTGCAAGGTA AAGCGATTAA CGATCACGCT
TCACGCGACA TTAAAGTATT GGTTGTAGGT AACCCTGCAA ACACCAACGC TTTGATTGCT
CAGCGTAACG CTCCAGACAT TAACCCACGT CAATTCACCG CTATGATGCG TTTGGATCAC
AACCGTGGTT TGTCTCAGCT AGCTGCTAAG CTAGACGTAA CCTTAGAAGA CATCACTAAG
ATGACTATTT GGGGTAACCA CTCTGCTACT CAGTACCCAG ATCTTTTCCA CACTTTGGTT
AAAGGCGACG TTGCCGTTGA GCAAGTAGAG AAAGATTGGT ACGAAAACGA CTTTATTCCT
ACTGTTCAGC AACGCGGTGC AGCTATCATT AAAGCTCGTG GAGCGTCTTC TGCTGCGTCT
GCTGCTAACG CTGCAATTTT CCATATGCGC GATTGGGCTT TGGGTACGCC AGAGAACGAT
TGGGTTTCTA TGGGCGTATA CAGCGATGGT AGCTACGGTA TAGAAGAAGG TTTAATCTAC
TCTTTCCCAT GTGTTTGCAA AAACGGCGAC TGGGAAATTG TTCAAGGTTT AACTATCGAT
GAGTTTTCTC GCGCTAAAAT GACCGCGACT GAAAATGAAT TAAAAGAAGA GCGCGACGCT
GTAAAATCTT TGTTGCCTGC TTAA
|
|---|
| Protein sequence | MKAPVRVAVT GAAGQISYSL LFRIAAGEML GKDQPVILQM LEITPALEAL KGVAMELDDC
AFPLLAGMVC SDDPNVAFKD ADYALLVGAR PRGPGMERKD LLEANAAIFS VQGKAINDHA
SRDIKVLVVG NPANTNALIA QRNAPDINPR QFTAMMRLDH NRGLSQLAAK LDVTLEDITK
MTIWGNHSAT QYPDLFHTLV KGDVAVEQVE KDWYENDFIP TVQQRGAAII KARGASSAAS
AANAAIFHMR DWALGTPEND WVSMGVYSDG SYGIEEGLIY SFPCVCKNGD WEIVQGLTID
EFSRAKMTAT ENELKEERDA VKSLLPA
|
|---|
| |