| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1647 |
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| Symbol | |
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| ID | 3965163 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2112497 |
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| End bp | 2114122 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637920728 |
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| Product | sigma-24 (FecI-like) |
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| Protein accession | YP_527119 |
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| Protein GI | 90021292 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCTTT TTAAAGCACG TATCCGCATA GCAGACACAA ACGACGCCGG CCTTGTGCTC
GCATCACTCG GAGGCGATAG AGACGCCTTC TGCGAGATAG TAACCCGCTA TCAGAACCTA
CTATGCTCGC TGGCTTACTC ATCGCTAGGG GATTTAAAAT ACAGCGAGGA TGTAACTCAA
GAGACCTTCG TTGAAGCGTG GAAGAAACTA GACAGCTTGC GAGACCCAGA AAAATTGAAA
TCGTGGCTAT GCGGGATACT GCGATATAAA GTGAGCCACT TTAGACGCAA AGAAGCCAAC
CAGCCTATAA AAGGTGCCGA TGAACTGGAA GAGCTGGATG AGAAAAACGA AACACCAGCC
AGTGAAGGTA AGCTAGAAGA TCAAGCCATA AGCGCTCAGC AACAAGCATT GCTGTGGCAA
GCACTGGAAA AAATGCCAGA AACCTACCGC GAGCCACTCA TCCTCTTTTA CCGCGAACAG
TGTTCGGTAG AGTATGTGGC TAGCCAACTC GACCTAACCG AAGACACCGT AAAACAGCGT
CTGTCTCGGG GCCGTAAACA ACTTCAAAAA GCAATGATCA CCTTCGTAGA AGATACCCTA
ACAAAAAGCA AACAAGGCAC AGCGTTCACT GTTGCTGTTA TGGCTGCCAT ACAAGGGATA
TCACCGCCGG TAAAAGCCTC CATACTAGGT ACCGGTGCCG TCAAAGGCGG CTTACTTTTC
AAGTGGGCGA GCTTGCTAAT TTTTATGGCG TCTTTCGCGG GTATTATAAG CTCTTACTTC
GGGCTAAGAG CTGGGCTAGC TCAGTCGCGC ACCCAGCGAG AACGCAAACG TACCATTTTA
TTTGTCTCGC TGTTTTTCGG GATTGTCATT ATTTATATAC TAGGGATGTT TGGCCTAAAA
CACTTCGCAG TCAACGACCA TACAATGGCA GCTGGCTATT CCACCGCTGC GCACTTACTG
GTTTTGGCAT TTATTACTAG CTATGTGGTA CTTGTAATTA GAATGCTTAA AGGGATGCGT
AAACTACGAG CACAAGAGCG ATTGTTTCAC CCAGAAGCAT TTCAAGCACA AGCAGACCAA
TTGCACTCCA AGCAACGTGA ATACAAAAGT CGTCTTCGCC TAGGGGGTAT ACCGTTAATC
CATTTCCGCT TCGGCATGCC AGAAATAGGA GACAAACCGA TTGTAGGCTG GATAGCCGGC
GGTGACCTTG CGTATGGAAT ACTATTCGCA TGGGGCGGCG TGGCCATTGC CCCTATTAGC
GTAGGCATTA TTTCGATAGG CGCAATCAGT ATTGGAGCCG TAGGTTTTGG ACTGTTTGGC
ATAGGCACCA TTGCCGTAGG CGCCATCGCC TTTGGCGCCT CCGCTATTGG CTACAAAGCG
TATGCCTCAT TCTCATCCCT AGGCTGGGAA AGTGCTTTTA GCAACGGTTT CTCCACCGCA
ATAGACGCCG CAATTGGCCC CATCGCCATT GCGCAAGAAG TAAACACCCC CCTAGCCGCC
GATATCGCCA ACCTATCGCT AATGGACCAA AGCTACCTAT GGATAATGGC CGCCATAATA
GTACTCGTTA TTGTACCGGC CGTGCTGCAT TCCAATAAGG TTCGCAAAAT AATGGGTAAA
CATTAA
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| Protein sequence | MSLFKARIRI ADTNDAGLVL ASLGGDRDAF CEIVTRYQNL LCSLAYSSLG DLKYSEDVTQ
ETFVEAWKKL DSLRDPEKLK SWLCGILRYK VSHFRRKEAN QPIKGADELE ELDEKNETPA
SEGKLEDQAI SAQQQALLWQ ALEKMPETYR EPLILFYREQ CSVEYVASQL DLTEDTVKQR
LSRGRKQLQK AMITFVEDTL TKSKQGTAFT VAVMAAIQGI SPPVKASILG TGAVKGGLLF
KWASLLIFMA SFAGIISSYF GLRAGLAQSR TQRERKRTIL FVSLFFGIVI IYILGMFGLK
HFAVNDHTMA AGYSTAAHLL VLAFITSYVV LVIRMLKGMR KLRAQERLFH PEAFQAQADQ
LHSKQREYKS RLRLGGIPLI HFRFGMPEIG DKPIVGWIAG GDLAYGILFA WGGVAIAPIS
VGIISIGAIS IGAVGFGLFG IGTIAVGAIA FGASAIGYKA YASFSSLGWE SAFSNGFSTA
IDAAIGPIAI AQEVNTPLAA DIANLSLMDQ SYLWIMAAII VLVIVPAVLH SNKVRKIMGK
H
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