| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1631 |
|---|
| Symbol | |
|---|
| ID | 3965186 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 2094334 |
|---|
| End bp | 2095566 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637920714 |
|---|
| Product | 3-oxoacyl-[acyl-carrier-protein] synthase II |
|---|
| Protein accession | YP_527105 |
|---|
| Protein GI | 90021278 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0304] 3-oxoacyl-(acyl-carrier-protein) synthase |
|---|
| TIGRFAM ID | [TIGR03150] beta-ketoacyl-acyl-carrier-protein synthase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00000364283 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTCGTA AAAGGGTAGT GGTAACCGGC ATAGGCATGG TGAGCGCGCT TGGCAATAGC
GTAGATGAAA CCTGGTCACG CATACTAAAT GGCGAAAGTG GTATTCGAGA AATTACCGCA
TTCGACGCTT CAGCTTTTGC AACCCGAATT AGTGGCTCTG TTCAAAACCT TGATATAACT
CCTTACTTGC AAGAAAAAGA AGCCCGTAAA TTAGACCCGT TTATTCAATA TGGCATGGCT
GCTGGTATTC AGGCAGTAGA AGACTCCGGC CTAGTAGTAA CCGACGAAAA TGCCGCGCGT
ATTGGCTGTA TTGTGGGTTC GGGTATTGGT GGTTTAGGCA GCATTGAAGA CACCGCCGTT
TTAATTGAAG AAAAAGGCCC GCGCCGTATT TCGCCATTCT TTGTGCCTGG CGCAATTATC
AATATGATTG CCGGCAACCT TTCTATTCGC TACGGCTTTA AAGGTATTAA CTTAGCAGTA
AGTACAGCGT GTACCTCGGG TACACACTCC ATTGGCTTAG CTGCACGCGA AATTTTTTAT
GGTACTGCCG ATGTAATGAT TGCCGGTGGT GCTGAAATGG CTACAACTAA AGTAGGCATA
GGTGGGTTTG CCGCTGCACG CGCGCTTTCC CGCAGAAACG ACGAGCCAAC CAAAGCAAGC
CGCCCATGGG ATAAAGACCG CGACGGTTTT GTGCTTGGCG ATGGCGCAGG TATTTTAGTA
CTAGAAGAAT ATGAGCACGC AAAAGCGCGT GGTGCCAAAA TATATGCCGA GCTAACGGGT
GTTGGTACAA GCGCCGATGC GTACCACATT ACTTCGCCTT CCGGTGACGG CGCTGAGCTT
TCCATGCGCA ATGCCATTGC CGACTCTGGT ATGAGCTTAG AAGAAATTAA CCATGTAAAT
GCTCACGGCA CGTCTACACC TGCTGGCGAT ACCGCCGAGT GTAAAGCGCT TAAAAATGTA
TTTGGAAGCC ACGCACCTAA TCTTGCGGTT AGCTCAACCA AATCTATGAT TGGTCACTTA
CTGGGTGCCG CCGGCGCCGT AGAAGCTATT TTTACTGTGC TAGCTATTCG CGATCAAGTG
GCACCGCCAA CCATTAATTT GGATAACCCA GACGAAGGTT GTGATTTAAA CTTCGTTGCG
CACAAGGCGC AAAAAATGGA AATTAACGGC GCCATGAGTA ACTCTTTTGG TTTTGGTGGT
ACCAACGGTA CGCTAGTTTT CAAAAAAGTA TAA
|
|---|
| Protein sequence | MSRKRVVVTG IGMVSALGNS VDETWSRILN GESGIREITA FDASAFATRI SGSVQNLDIT
PYLQEKEARK LDPFIQYGMA AGIQAVEDSG LVVTDENAAR IGCIVGSGIG GLGSIEDTAV
LIEEKGPRRI SPFFVPGAII NMIAGNLSIR YGFKGINLAV STACTSGTHS IGLAAREIFY
GTADVMIAGG AEMATTKVGI GGFAAARALS RRNDEPTKAS RPWDKDRDGF VLGDGAGILV
LEEYEHAKAR GAKIYAELTG VGTSADAYHI TSPSGDGAEL SMRNAIADSG MSLEEINHVN
AHGTSTPAGD TAECKALKNV FGSHAPNLAV SSTKSMIGHL LGAAGAVEAI FTVLAIRDQV
APPTINLDNP DEGCDLNFVA HKAQKMEING AMSNSFGFGG TNGTLVFKKV
|
|---|
| |